GWAS677175_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS677175_H (subcutaneous adipose tissue measurement QTL GWAS677175 (human)) Homo sapiens

Symbol: GWAS677175_H
Name: subcutaneous adipose tissue measurement QTL GWAS677175 (human)
RGD ID: 407028199
Trait: subcutaneous adipose tissue measurement
Measurement Type: abdominal fat morphological measurement   (CMO:0000311)    
LOD Score: Not Available
P Value: 7.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381560,768,508 - 60,768,509RGD_MAPPER_PIPELINEGRCh38
GRCh371561,060,707 - 61,060,708RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS677175_HHumanabdominal fat morphological measurement  IAGPrs12591650405850206Based on the EFO term IDGWAS_CATALOGPMID:22589738

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS677175_HHumansubcutaneous adipose tissue measurement  IAGPrs12591650405850206 GWAS_CATALOGPMID:22589738
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1318175RORARAR related orphan receptor A156048828461229302Human

Position Markers

Peak: (rs12591650)
Human AssemblyChrPosition (strand)Source
GRCh381560,768,508 - 60,768,509RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407028199GWAS677175_Hsubcutaneous adipose tissue measurement QTL GWAS677175 (human)0.0000007subcutaneous adipose tissue measurementabdominal fat morphological measurement (CMO:0000311)156076850860768509Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS677175_H GCST001521 Subcutaneous adipose tissue 5,560 European ancestry female individuals, 4,997 European ancestry male individuals A 0.85 7E-7 6.155 rs12591650 N/A subcutaneous adipose tissue measurement (EFO:0004766)
 PMID:22589738
Database Acc Id Source(s)
GWAS Catalog GCST001521 GWAS Catalog

RGD Curation Notes
Note Type Note Reference