GWAS674546_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS674546_H (optic disc size measurement QTL GWAS674546 (human)) Homo sapiens

Symbol: GWAS674546_H
Name: optic disc size measurement QTL GWAS674546 (human)
RGD ID: 407025570
Trait: optic disc size measurement
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38110,578,547 - 10,578,548RGD_MAPPER_PIPELINEGRCh38
GRCh37110,638,604 - 10,638,605RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS674546_HHumanoptic disc size measurement  IAGPrs12741973405850206 GWAS_CATALOGPMID:20395239
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68470PEX14peroxisomal biogenesis factor 1411047495010630758Human

Position Markers

Peak: (rs12741973)
Human AssemblyChrPosition (strand)Source
GRCh38110,578,547 - 10,578,548RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407025570GWAS674546_Hoptic disc size measurement QTL GWAS674546 (human)0.000007optic disc size measurement11057854710578548Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS674546_H GCST000658 Optic nerve measurement (rim area) 1,368 European ancestry twins from 666 families C NR 0.000007 5.155 rs12741973 0.167 optic disc size measurement (EFO:0004832)
 PMID:20395239
Database Acc Id Source(s)
GWAS Catalog GCST000658 GWAS Catalog

RGD Curation Notes
Note Type Note Reference