GWAS671462_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS671462_H (reasoning QTL GWAS671462 (human)) Homo sapiens

Symbol: GWAS671462_H
Name: reasoning QTL GWAS671462 (human)
RGD ID: 407022486
Trait: reasoning
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812,138,242 - 2,138,243RGD_MAPPER_PIPELINEGRCh38
GRCh3712,069,681 - 2,069,682RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS671462_HHumanreasoning  IAGPrs3753242405850206 GWAS_CATALOGPMID:21107309
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736361PRKCZprotein kinase C zeta120485042185395Human

Position Markers

Peak: (rs3753242)
Human AssemblyChrPosition (strand)Source
GRCh3812,138,242 - 2,138,243RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407022486GWAS671462_Hreasoning QTL GWAS671462 (human)0.000001reasoning121382422138243Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS671462_H GCST000885 Response to antipsychotic treatment in schizophrenia (reasoning) 738 European ancestry, African American, and other ancestry cases ? 0.06 0.000001 6 rs3753242 N/A reasoning (EFO:0004350)
 PMID:21107309
Database Acc Id Source(s)
GWAS Catalog GCST000885 GWAS Catalog

RGD Curation Notes
Note Type Note Reference