GWAS671432_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS671432_H (body mass index QTL GWAS671432 (human)) Homo sapiens

Symbol: GWAS671432_H
Name: body mass index QTL GWAS671432 (human)
RGD ID: 407022456
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38116,532,830 - 16,532,831RGD_MAPPER_PIPELINEGRCh38
GRCh37116,859,325 - 16,859,326RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS671432_HHumanbody mass index (BMI)  IAGPrs78886584405850206Based on the EFO term IDGWAS_CATALOGPMID:36376304

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS671432_HHumanbody mass index  IAGPrs78886584405850206 GWAS_CATALOGPMID:36376304
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
155634446LOC127267678H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16859275-1685980011653278016533305Human

Position Markers

Peak: (rs78886584)
Human AssemblyChrPosition (strand)Source
GRCh38116,532,830 - 16,532,831RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407350049GWAS999025_Hbody mass index QTL GWAS999025 (human)4e-09body mass indexbody mass index (BMI) (CMO:0000105)11653283016532831Human
407022456GWAS671432_Hbody mass index QTL GWAS671432 (human)2e-08body mass indexbody mass index (BMI) (CMO:0000105)11653283016532831Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407089902GWAS738878_Hbody height QTL GWAS738878 (human)9e-10body height (VT:0001253)body height (CMO:0000106)11653283016532831Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS671432_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals A NR 2E-8 7.699 rs78886584 0.01151 body mass index (EFO:0004340)
 PMID:36376304
GWAS738878_H GCST010988 Adult body size 453,169 European ancestry individuals A 0.509017 9E-10 9.046 rs78886584 0.0084915 body height (EFO:0004339)
 PMID:32376654
GWAS999025_H GCST007039 Body mass index approximately 458,000 European ancestry individuals ? NR 4E-9 8.398 rs78886584 N/A body mass index (EFO:0004340)
 PMID:30595370
Database Acc Id Source(s)
GWAS Catalog GCST90179150 GWAS Catalog

RGD Curation Notes
Note Type Note Reference