GWAS668866_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS668866_H (HIV-1 infection QTL GWAS668866 (human)) Homo sapiens

Symbol: GWAS668866_H
Name: HIV-1 infection QTL GWAS668866 (human)
RGD ID: 407019890
Trait: response to viral infection trait   (VT:0010439)    
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382137,368,522 - 37,368,523RGD_MAPPER_PIPELINEGRCh38
GRCh372138,740,824 - 38,740,825RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS668866_HHumanhuman immunodeficiency virus infectious disease  IAGPrs12483205405850206Based on the EFO term IDGWAS_CATALOGPMID:21364930


Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS668866_HHumanresponse to viral infection trait  IAGPrs12483205405850206 GWAS_CATALOGPMID:21364930

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS668866_HHumanHIV-1 infection  IAGPrs12483205405850206 GWAS_CATALOGPMID:21364930

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
737237DYRK1Adual specificity tyrosine phosphorylation regulated kinase 1A213736557337526358Human


Peak: (rs12483205)
Human AssemblyChrPosition (strand)Source
GRCh382137,368,522 - 37,368,523RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407019890GWAS668866_HHIV-1 infection QTL GWAS668866 (human)0.000005response to viral infection trait (VT:0010439)213736852237368523Human
407005690GWAS654666_Hmean corpuscular hemoglobin QTL GWAS654666 (human)4e-10mean corpuscular hemoglobinmean corpuscular hemoglobin (CMO:0000290)213736852237368523Human
2303081MAMTS49_HMammary tumor susceptibility QTL 49 (human)1.72Mammary tumor susceptibility211795044843950448Human
597045181GWAS1141255_Hmean corpuscular hemoglobin QTL GWAS1141255 (human)1e-09mean corpuscular hemoglobinmean corpuscular hemoglobin (CMO:0000290)213736852237368523Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS668866_H GCST000990 HIV-1 replication 191 European ancestry individuals ? NR 0.000005 5.302 rs12483205 N/A HIV-1 infection (EFO:0000180)
 PMID:21364930
GWAS1141255_H GCST007068 Mean corpuscular hemoglobin approximately 443,000 European ancestry individuals ? NR 1E-9 9 rs12483205 N/A mean corpuscular hemoglobin (EFO:0004527)
 PMID:30595370
GWAS654666_H GCST90002390 Mean corpuscular hemoglobin 408,112 British individuals G 0.232423 4E-10 9.398 rs12483205 0.016332354 mean corpuscular hemoglobin (EFO:0004527)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST000990 GWAS Catalog

Note Type Note Reference