GWAS659795_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS659795_H (skin pigmentation measurement QTL GWAS659795 (human)) Homo sapiens

Symbol: GWAS659795_H
Name: skin pigmentation measurement QTL GWAS659795 (human)
RGD ID: 407010819
Trait: skin pigmentation measurement
LOD Score: Not Available
P Value: 8.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381548,246,829 - 48,246,830RGD_MAPPER_PIPELINEGRCh38
GRCh371548,539,026 - 48,539,027RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS659795_HHumanskin pigmentation measurement  IAGPrs11636073405850206 GWAS_CATALOGPMID:30895295
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
731943SLC12A1solute carrier family 12 member 1154820630248304078Human

Position Markers

Peak: (rs11636073)
Human AssemblyChrPosition (strand)Source
GRCh381548,246,829 - 48,246,830RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407010819GWAS659795_Hskin pigmentation measurement QTL GWAS659795 (human)8e-09skin pigmentation measurement154824682948246830Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS659795_H GCST007739 Skin reflectance (Melanin index) 720 South Asian ancestry individuals T NR 8E-9 8.097 rs11636073 0.354282 skin pigmentation measurement (EFO:0007009)
 PMID:30895295
Database Acc Id Source(s)
GWAS Catalog GCST007739 GWAS Catalog

RGD Curation Notes
Note Type Note Reference