GWAS658318_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS658318_H (mean corpuscular hemoglobin QTL GWAS658318 (human)) Homo sapiens

Symbol: GWAS658318_H
Name: mean corpuscular hemoglobin QTL GWAS658318 (human)
RGD ID: 407009342
Trait: mean corpuscular hemoglobin
Measurement Type: mean corpuscular hemoglobin   (CMO:0000290)    
LOD Score: Not Available
P Value: 9.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382207,541,168 - 207,541,169RGD_MAPPER_PIPELINEGRCh38
GRCh372208,405,892 - 208,405,893RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS658318_HHumanmean corpuscular hemoglobin  IAGPrs11883511405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS658318_HHumanmean corpuscular hemoglobin  IAGPrs11883511405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
730886CREB1cAMP responsive element binding protein 12207529962207605988Human


Peak: (rs11883511)
Human AssemblyChrPosition (strand)Source
GRCh382207,541,168 - 207,541,169RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2293458PRSTS291_HProstate tumor susceptibility QTL 291 (human)0.012Prostate tumor susceptibility2200715236226715236Human
406992465GWAS641441_Hmean corpuscular hemoglobin concentration QTL GWAS641441 (human)8e-12mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)2207541168207541169Human
1643053BW117_HBody Weight QTL 117 (human)2.40.00044Body weight2200715236226715236Human
407009342GWAS658318_Hmean corpuscular hemoglobin QTL GWAS658318 (human)9e-10mean corpuscular hemoglobinmean corpuscular hemoglobin (CMO:0000290)2207541168207541169Human
1643254BW125_HBody Weight QTL 125 (human)1.450.005Body weightbody mass index2200715236226715236Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS658318_H GCST90002390 Mean corpuscular hemoglobin 408,112 British individuals A 0.329946 9E-10 9.046 rs11883511 0.014353079 mean corpuscular hemoglobin (EFO:0004527)
 PMID:32888494
GWAS641441_H GCST90002326 Mean corpuscular hemoglobin 630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals A 0.332254 8E-12 11.097 rs11883511 N/A mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:32888493
Database
Acc Id
Source(s)
GWAS Catalog GCST90002390 GWAS Catalog

Note Type Note Reference