GWAS656416_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS656416_H (sex hormone-binding globulin measurement QTL GWAS656416 (human)) Homo sapiens

Symbol: GWAS656416_H
Name: sex hormone-binding globulin measurement QTL GWAS656416 (human)
RGD ID: 407007440
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 1.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381552,402,720 - 52,402,721RGD_MAPPER_PIPELINEGRCh38
GRCh371552,694,917 - 52,694,918RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS656416_HHumansex hormone-binding globulin measurement  IAGPrs191884522405850206 GWAS_CATALOGPMID:32042192
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
731453MYO5Amyosin VA155230728352529050Human

Position Markers

Peak: (rs191884522)
Human AssemblyChrPosition (strand)Source
GRCh381552,402,720 - 52,402,721RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407007440GWAS656416_Hsex hormone-binding globulin measurement QTL GWAS656416 (human)1e-21sex hormone-binding globulin measurement155240272052402721Human
406986704GWAS635680_Hsex hormone-binding globulin measurement QTL GWAS635680 (human)5e-17sex hormone-binding globulin measurement155240272052402721Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407010295GWAS659271_Hsex hormone-binding globulin measurement QTL GWAS659271 (human)6e-23sex hormone-binding globulin measurement155240272052402721Human
406993370GWAS642346_Hsex hormone-binding globulin measurement QTL GWAS642346 (human)2e-14sex hormone-binding globulin measurement155240272052402721Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS635680_H GCST90012109 Sex hormone-binding globulin levels 180,726 European ancestry men C 0.998113 5E-17 16.302 rs191884522 0.129764 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS642346_H GCST90012108 Sex hormone-binding globulin levels adjusted for BMI 180,094 European ancestry men C 0.998113 2E-14 13.699 rs191884522 0.117303 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS656416_H GCST90012110 Sex hormone-binding globulin levels adjusted for BMI 368,929 European ancestry individuals C 0.998188 1E-21 21 rs191884522 0.0992526 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS659271_H GCST90012111 Sex hormone-binding globulin levels 370,125 European ancestry individuals C 0.998188 6E-23 22.222 rs191884522 0.113425 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
Database Acc Id Source(s)
GWAS Catalog GCST90012110 GWAS Catalog

RGD Curation Notes
Note Type Note Reference