GWAS655755_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS655755_H (Alzheimer's disease biomarker measurement QTL GWAS655755 (human)) Homo sapiens

Symbol: GWAS655755_H
Name: Alzheimer's disease biomarker measurement QTL GWAS655755 (human)
RGD ID: 407006779
Trait: Alzheimer's disease biomarker measurement
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386166,452,187 - 166,452,188RGD_MAPPER_PIPELINEGRCh38
GRCh376166,865,675 - 166,865,676RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS655755_HHumanAlzheimer's disease biomarker measurement  IAGPrs4710051405850206 GWAS_CATALOGPMID:29860282
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348784RPS6KA2ribosomal protein S6 kinase A26166409364166862773Human

Position Markers

Peak: (rs4710051)
Human AssemblyChrPosition (strand)Source
GRCh386166,452,187 - 166,452,188RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407006779GWAS655755_HAlzheimer's disease biomarker measurement QTL GWAS655755 (human)0.000002Alzheimer's disease biomarker measurement6166452187166452188Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS655755_H GCST006136 Alzheimer's disease progression score 944 European ancestry individuals ? NR 0.000002 5.699 rs4710051 0.05 Alzheimer's disease biomarker measurement (EFO:0006514)
 PMID:29860282
Database Acc Id Source(s)
GWAS Catalog GCST006136 GWAS Catalog

RGD Curation Notes
Note Type Note Reference