GWAS654062_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS654062_H (interleukin 17 measurement QTL GWAS654062 (human)) Homo sapiens

Symbol: GWAS654062_H
Name: interleukin 17 measurement QTL GWAS654062 (human)
RGD ID: 407005086
Trait: interleukin 17 measurement
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381146,670,055 - 46,670,056RGD_MAPPER_PIPELINEGRCh38
GRCh371146,691,605 - 46,691,606RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS654062_HHumaninterleukin 17 measurement  IAGPrs139556855405850206 GWAS_CATALOGPMID:27989323
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602498ATG13autophagy related 13114661755346674518Human

Position Markers

Peak: (rs139556855)
Human AssemblyChrPosition (strand)Source
GRCh381146,670,055 - 46,670,056RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407005086GWAS654062_Hinterleukin 17 measurement QTL GWAS654062 (human)0.000008interleukin 17 measurement114667005546670056Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS654062_H GCST004442 Interleukin-17 levels 7,760 Finnish ancestry individuals C NR 0.000008 5.097 rs139556855 0.3229 interleukin 17 measurement (EFO:0008174)
 PMID:27989323
Database Acc Id Source(s)
GWAS Catalog GCST004442 GWAS Catalog

RGD Curation Notes
Note Type Note Reference