GWAS653027_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS653027_H (hepatocyte growth factor measurement QTL GWAS653027 (human)) Homo sapiens

Symbol: GWAS653027_H
Name: hepatocyte growth factor measurement QTL GWAS653027 (human)
RGD ID: 407004051
Trait: hepatocyte growth factor measurement
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381200,817,155 - 200,817,156RGD_MAPPER_PIPELINEGRCh38
GRCh371200,786,283 - 200,786,284RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS653027_HHumanhepatocyte growth factor measurement  IAGPrs149694488405850206 GWAS_CATALOGPMID:27989323
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1604039CAMSAP2calmodulin regulated spectrin associated protein family member 21200738893200860704Human

Position Markers

Peak: (rs149694488)
Human AssemblyChrPosition (strand)Source
GRCh381200,817,155 - 200,817,156RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407004051GWAS653027_Hhepatocyte growth factor measurement QTL GWAS653027 (human)0.000005hepatocyte growth factor measurement1200817155200817156Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS653027_H GCST004449 Hepatocyte growth factor levels 8,292 Finnish ancestry individuals C NR 0.000005 5.302 rs149694488 0.1383 hepatocyte growth factor measurement (EFO:0006903)
 PMID:27989323
Database Acc Id Source(s)
GWAS Catalog GCST004449 GWAS Catalog

RGD Curation Notes
Note Type Note Reference