GWAS650909_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS650909_H (age at menarche QTL GWAS650909 (human)) Homo sapiens

Symbol: GWAS650909_H
Name: age at menarche QTL GWAS650909 (human)
RGD ID: 407001933
Trait: age at menarche
LOD Score: Not Available
P Value: 7.0E-20
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381113,293,892 - 13,293,893RGD_MAPPER_PIPELINEGRCh38
GRCh371113,315,439 - 13,315,440RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS650909_HHumanage at menarche  IAGPrs11022756405850206 GWAS_CATALOGPMID:25231870

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732520BMAL1basic helix-loop-helix ARNT like 1111327665213387266Human


Peak: (rs11022756)
Human AssemblyChrPosition (strand)Source
GRCh381113,293,892 - 13,293,893RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1576345LVC1_HLeft ventricular contractility QTL 1 (human)3.93Left ventricular contractility11797076733970767Human
2289313BW388_HBody weight QTL 388 (human)1.570.00356Body fat amountabdominal11443467130434671Human
1559107SCL32_HSerum cholesterol level QTL 32 (human)3.27Lipid levelLDL cholesterol11289243028892430Human
1559113SCL31_HSerum cholesterol level QTL 31 (human)3.72Lipid levelLDL cholesterol11289243028892430Human
407001933GWAS650909_Hage at menarche QTL GWAS650909 (human)7e-20age at menarche111329389213293893Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS650909_H GCST002541 Menarche (age at onset) Up to 182,413 European ancestry females A 0.29 7E-20 19.155 rs11022756 0.05 age at menarche (EFO:0004703)
 PMID:25231870
Database
Acc Id
Source(s)
GWAS Catalog GCST002541 GWAS Catalog

Note Type Note Reference