GWAS634663_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS634663_H (hemoglobin measurement QTL GWAS634663 (human)) Homo sapiens

Symbol: GWAS634663_H
Name: hemoglobin measurement QTL GWAS634663 (human)
RGD ID: 406985687
Trait: hemoglobin measurement
Measurement Type: hemoglobin measurement   (CMO:0000508)    
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38112,601,409 - 12,601,410RGD_MAPPER_PIPELINEGRCh38
GRCh37112,661,421 - 12,661,422RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS634663_HHumanhemoglobin measurement  IAGPrs12136952405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS634663_HHumanhemoglobin measurement  IAGPrs12136952405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1313699DHRS3dehydrogenase/reductase 311256791012618210Human


Peak: (rs12136952)
Human AssemblyChrPosition (strand)Source
GRCh38112,601,409 - 12,601,410RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597043110GWAS1139184_Herythrocyte count QTL GWAS1139184 (human)2e-13erythrocyte countred blood cell count (CMO:0000025)11260140912601410Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406985687GWAS634663_Hhemoglobin measurement QTL GWAS634663 (human)3e-12hemoglobin measurementhemoglobin measurement (CMO:0000508)11260140912601410Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597305797GWAS1401871_Herythrocyte count QTL GWAS1401871 (human)3e-09erythrocyte countred blood cell count (CMO:0000025)11260140912601410Human
597110120GWAS1206194_Herythrocyte count QTL GWAS1206194 (human)2e-10erythrocyte countred blood cell count (CMO:0000025)11260140912601410Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS634663_H GCST90002384 Hemoglobin 408,112 British individuals C 0.329011 3E-12 11.523 rs12136952 0.016383281 hemoglobin measurement (EFO:0004509)
 PMID:32888494
GWAS1139184_H GCST007069 Red blood cell count approximately 445,000 European ancestry individuals ? NR 2E-13 12.699 rs12136952 N/A erythrocyte count (EFO:0004305)
 PMID:30595370
GWAS1206194_H GCST90002403 Red blood cell count 408,112 British individuals C 0.328997 2E-10 9.699 rs12136952 0.014879513 erythrocyte count (EFO:0004305)
 PMID:32888494
GWAS1733721_H GCST90002363 Red blood cell count 545,203 European ancestry individuals C 0.324811 6E-12 11.222 rs12136952 0.013713 red blood cell density (OBA:2045260)
 PMID:32888493
GWAS1401871_H GCST90018971 Red blood cell count 350,475 European ancestry individuals, 153,512 East Asian ancestry individuals C NR 3E-9 8.523 rs12136952 0.0112 erythrocyte count (EFO:0004305)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90002384 GWAS Catalog

Note Type Note Reference