GWAS627351_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS627351_H (hemoglobin measurement QTL GWAS627351 (human)) Homo sapiens

Symbol: GWAS627351_H
Name: hemoglobin measurement QTL GWAS627351 (human)
RGD ID: 406978375
Trait: hemoglobin measurement
Measurement Type: hemoglobin measurement   (CMO:0000508)    
LOD Score: Not Available
P Value: 1.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382238,684,633 - 38,684,634RGD_MAPPER_PIPELINEGRCh38
GRCh372239,080,638 - 39,080,639RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS627351_HHumanhemoglobin measurement  IAGPrs5750669405850206Based on the EFO term IDGWAS_CATALOGPMID:32888493

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS627351_HHumanhemoglobin measurement  IAGPrs5750669405850206 GWAS_CATALOGPMID:32888493

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1342792TOMM22translocase of outer mitochondrial membrane 22223868195738685421Human


Peak: (rs5750669)
Human AssemblyChrPosition (strand)Source
GRCh382238,684,633 - 38,684,634RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406978375GWAS627351_Hhemoglobin measurement QTL GWAS627351 (human)1e-14hemoglobin measurementhemoglobin measurement (CMO:0000508)223868463338684634Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS627351_H GCST90002314 Hemoglobin concentration 746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals A 0.29533 1E-14 14 rs5750669 N/A hemoglobin measurement (EFO:0004509)
 PMID:32888493
Database
Acc Id
Source(s)
GWAS Catalog GCST90002314 GWAS Catalog

Note Type Note Reference