GWAS626921_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS626921_H (schizophrenia QTL GWAS626921 (human)) Homo sapiens

Symbol: GWAS626921_H
Name: schizophrenia QTL GWAS626921 (human)
RGD ID: 406977945
Trait: schizophrenia
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38724,678,350 - 24,678,351RGD_MAPPER_PIPELINEGRCh38
GRCh37724,717,969 - 24,717,970RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS626921_HHumanschizophrenia  IAGPrs79210963405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:32606422


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1323497PALS2protein associated with LIN7 2, MAGUK p55 family member72457345224694193Human


Peak: (rs79210963)
Human AssemblyChrPosition (strand)Source
GRCh38724,678,350 - 24,678,351RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597043525GWAS1139599_Hschizophrenia QTL GWAS1139599 (human)6e-09schizophrenia72467835024678351Human
597322910GWAS1418984_Hschizophrenia QTL GWAS1418984 (human)5e-12schizophrenia72467835024678351Human
597115440GWAS1211514_Hself reported educational attainment QTL GWAS1211514 (human)1e-19self reported educational attainment72467835024678351Human
406977945GWAS626921_Hschizophrenia QTL GWAS626921 (human)2e-09schizophrenia72467835024678351Human
597095900GWAS1191974_Hschizophrenia QTL GWAS1191974 (human)4e-09schizophrenia72467835024678351Human
2289453BW297_HBody weight QTL 297 (human)3.83Body weightbody mass index72334946449349464Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS626921_H GCST010640 Schizophrenia (MTAG) 67,764 individuals ? NR 2E-9 8.699 rs79210963 N/A PMID:32606422
GWAS1139599_H GCST009337 Schizophrenia 22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls ? NR 6E-9 8.222 rs79210963 1.0912265 PMID:31740837
GWAS1191974_H GCST012089 Schizophrenia (MTAG) at least 33,640 European ancestry cases, at least 43,456 European ancestry controls T 0.8917 4E-9 8.398 rs79210963 0.101115316 PMID:33479212
GWAS1211514_H GCST006571 Educational attainment (MTAG) 1,311,438 European ancestry individuals T 0.8846 1E-19 19 rs79210963 0.0186 self reported educational attainment (EFO:0004784)
 PMID:30038396
None Available GCST90020095 Schizophrenia (MTAG) 940,613 European ancestry individuals ? NR 2E-9 8.699 rs79210963 N/A PMID:34159505
GWAS1418984_H GCST90128471 Schizophrenia 53,386 European ancestry cases, 77,258 European ancestry controls, 14,004 East Asian ancestry cases, 16,757 East Asian ancestry controls, 6,152 African American cases, 3,918 African American controls, 1,234 Latino cases, 3,090 Latino controls T 0.902 5E-12 11.302 rs79210963 0.91888 PMID:35396580
Database
Acc Id
Source(s)
GWAS Catalog GCST010640 GWAS Catalog
  GCST90020095 GWAS Catalog

Note Type Note Reference