GWAS626168_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS626168_H (aspartate aminotransferase measurement QTL GWAS626168 (human)) Homo sapiens

Symbol: GWAS626168_H
Name: aspartate aminotransferase measurement QTL GWAS626168 (human)
RGD ID: 406977192
Trait: aspartate aminotransferase measurement
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,431,740 - 58,431,741RGD_MAPPER_PIPELINEGRCh38
GRCh371558,723,939 - 58,723,940RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs2070895)
Human AssemblyChrPosition (strand)Source
GRCh381558,431,740 - 58,431,741RGD_MAPPER_PIPELINE


1 to 10 of 574 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597485469GWAS1581543_Hphosphatidylethanolamine measurement QTL GWAS1581543 (human)2e-30total cholesterol measurementblood total cholesterol level (CMO:0000051)155843174058431741Human
406895683GWAS544659_H1-oleoyl-GPE (18:1) measurement QTL GWAS544659 (human)5e-221-oleoyl-GPE (18:1) measurement155843174058431741Human
597485462GWAS1581536_Hphosphatidylethanolamine measurement QTL GWAS1581536 (human)5e-17phosphatidylethanolamine measurement155843174058431741Human
406986828GWAS635804_Hhigh density lipoprotein cholesterol measurement QTL GWAS635804 (human)3e-29high density lipoprotein cholesterol measurement155843174058431741Human
407096402GWAS745378_Hphospholipids:total lipids ratio QTL GWAS745378 (human)1e-148phospholipids:total lipids ratio155843174058431741Human
596974465GWAS1093984_Hglycerophospholipid measurement QTL GWAS1093984 (human)2e-22glycerophospholipid measurement155843174058431741Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
596974464GWAS1093983_Hphosphatidylethanolamine measurement QTL GWAS1093983 (human)3e-54cholesterol in small HDL measurement 155843174058431741Human
406979668GWAS628644_Hhemoglobin measurement QTL GWAS628644 (human)7e-25hemoglobin measurement155843174058431741Human
596974466GWAS1093985_Hphosphatidylethanolamine measurement QTL GWAS1093985 (human)3e-79phosphatidylethanolamine measurement155843174058431741Human

1 to 10 of 574 rows


1 to 20 of 237 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1638055_H GCST90444427 Total cholesterol levels (1KG-JEWEL7K) 181,927 Japanese ancestry individuals G NR 5E-51 50.302 rs2070895 0.0606 total cholesterol measurement (EFO:0004574)
 PMID:39702642
GWAS1639894_H GCST90479670 mean corpuscular hemoglobin concentration (MCHC, mean, inv-norm transformed) 114,851 African American or Afro-Caribbean individuals, 55,797 Hispanic or Latin American individuals, 5,942 East Asian ancestry individuals, 407,345 European ancestry individuals G 0.7091 3E-17 16.523 rs2070895 0.0252 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1640439_H GCST90479669 mean corpuscular hemoglobin concentration (MCHC, maximum, inv-norm transformed) 114,857 African American or Afro-Caribbean individuals, 55,793 Hispanic or Latin American individuals, 5,943 East Asian ancestry individuals, 407,343 European ancestry individuals G 0.7091 6E-12 11.222 rs2070895 0.02018 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1649240_H GCST90475349 high density lipoprotein cholesterol (HDLC, mean, inv-norm transformed) 54,914 Hispanic or Latin American individuals G 0.5725 4E-56 55.398 rs2070895 0.09893 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1649381_H GCST90475353 high density lipoprotein cholesterol (HDLC, minimm, inv-norm transformed) 54,914 Hispanic or Latin American individuals G 0.5725 4E-47 46.398 rs2070895 0.0904 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1652028_H GCST90475345 high density lipoprotein cholesterol (HDLC, maximum, inv-norm transformed) 54,914 Hispanic or Latin American individuals G 0.5725 9E-54 53.046 rs2070895 0.09714 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:39024449
GWAS1661759_H GCST90476438 triglyceride (minimum, inv-norm transformed) 107,786 African American or Afro-Caribbean individuals G 0.4971 2E-15 14.699 rs2070895 0.03473 triglyceride measurement (EFO:0004530)
 PMID:39024449
None Available GCST90002363 Red blood cell count 545,203 European ancestry individuals A 0.219081 2E-15 14.699 rs2070895 0.017769 red blood cell density (OBA:2045260)
 PMID:32888493
GWAS1735620_H GCST90002367 Red blood cell count 727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals A 0.286443 1E-13 13 rs2070895 N/A red blood cell density (OBA:2045260)
 PMID:32888493
GWAS1748599_H GCST90093028 Cholesterol levels in very small VLDL 115,082 European ancestry individuals G 0.781321 8E-310 309.097 rs2070895 0.181887 total cholesterol measurement (EFO:0004574)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1748906_H GCST90093051 Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals G 0.782885 1E-142 142 rs2070895 0.128432 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1750748_H GCST90093037 Phospholipids to total lipids ratio in very small VLDL 115,082 European ancestry individuals G 0.781321 2E-64 63.699 rs2070895 0.0825184 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757708_H GCST90093041 Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals G 0.782885 3E-102 101.523 rs2070895 0.107834 cholesterol:total lipids ratio (EFO:0020943)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1757850_H GCST90093030 Cholesteryl ester levels in very small VLDL 115,082 European ancestry individuals G 0.781321 8E-275 274.097 rs2070895 0.170405 cholesteryl ester measurement (EFO:0010351)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758870_H GCST90302109 Free cholesterol to total lipids ratio in small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2375 3E-590 589.523 rs2070895 0.2376 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1759323_H GCST90301992 Mean diameter of LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2381 9E-173 172.046 rs2070895 0.1296 LDL particle size (OBA:2050113)
 PMID:38448586
GWAS1759487_H GCST90301972 Mean diameter of HDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2381 2E-362 361.699 rs2070895 0.1879 HDL particle size (OBA:2050115)
 PMID:38448586
GWAS1760067_H GCST90092869 Cholesterol to total lipids ratio in large VLDL 115,071 European ancestry individuals G 0.781343 7E-179 178.155 rs2070895 0.139104 cholesterol:total lipids ratio (EFO:0020943)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1766792_H GCST90239613 Very low density lipoprotein cholesterol levels 75,388 Taiwanese ancestry individuals ? NR 9E-62 61.046 rs2070895 N/A blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:36329257
GWAS1459014_H GCST004235 Total cholesterol levels 32,576 East Asian ancestry individuals, 187,365 European ancestry individuals A 0.41 5E-13 12.302 rs2070895 0.077 total cholesterol measurement (EFO:0004574)
 PMID:28334899
1 to 20 of 237 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90011899 GWAS Catalog

Note Type Note Reference