GWAS619380_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS619380_H (neuroticism measurement QTL GWAS619380 (human)) Homo sapiens

Symbol: GWAS619380_H
Name: neuroticism measurement QTL GWAS619380 (human)
RGD ID: 406970404
Trait: neuroticism measurement
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38117,695,363 - 17,695,364RGD_MAPPER_PIPELINEGRCh38
GRCh37118,021,858 - 18,021,859RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS619380_HHumanneuroticism measurement  IAGPrs2279817405850206 GWAS_CATALOGPMID:27089181

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1605662ARHGEF10LRho guanine nucleotide exchange factor 10 like11751343517697875Human


Peak: (rs2279817)
Human AssemblyChrPosition (strand)Source
GRCh38117,695,363 - 17,695,364RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597248186GWAS1344260_Hneuroticism measurement QTL GWAS1344260 (human)2e-08neuroticism measurement11769536317695364Human
406970404GWAS619380_Hneuroticism measurement QTL GWAS619380 (human)0.000002neuroticism measurement11769536317695364Human
597248654GWAS1344728_Hneuroticism measurement QTL GWAS1344728 (human)3e-08neuroticism measurement11769536317695364Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597248006GWAS1344080_Hneuroticism measurement QTL GWAS1344080 (human)4e-08neuroticism measurement11769536317695364Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS619380_H GCST003770 Neuroticism 170,911 European ancestry individuals T 0.802 0.000002 5.699 rs2279817 0.020470746 neuroticism measurement (EFO:0007660)
 PMID:27089181
GWAS1344080_H GCST90027244 Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis) 170,911 European ancestry individuals ? NR 4E-8 7.398 rs2279817 N/A neuroticism measurement (EFO:0007660)
 PMID:33349686
GWAS1344260_H GCST90027243 Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis) 170,911 European ancestry individuals ? NR 2E-8 7.699 rs2279817 N/A neuroticism measurement (EFO:0007660)
 PMID:33349686
GWAS1344728_H GCST90027240 Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis) 170,911 European ancestry individuals ? NR 3E-8 7.523 rs2279817 N/A neuroticism measurement (EFO:0007660)
 PMID:33349686
None Available GCST90027239 Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis) 170,911 European ancestry individuals ? NR 4E-8 7.398 rs2279817 N/A neuroticism measurement (EFO:0007660)
 PMID:33349686
None Available GCST90027242 Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis) 170,911 European ancestry individuals ? NR 2E-8 7.699 rs2279817 N/A neuroticism measurement (EFO:0007660)
 PMID:33349686
Database
Acc Id
Source(s)
GWAS Catalog GCST003770 GWAS Catalog

Note Type Note Reference