GWAS617439_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS617439_H (phosphatidylethanolamine measurement QTL GWAS617439 (human)) Homo sapiens

Symbol: GWAS617439_H
Name: phosphatidylethanolamine measurement QTL GWAS617439 (human)
RGD ID: 406968463
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 2.0E-28
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,431,227 - 58,431,228RGD_MAPPER_PIPELINEGRCh38
GRCh371558,723,426 - 58,723,427RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1077835)
Human AssemblyChrPosition (strand)Source
GRCh381558,431,227 - 58,431,228RGD_MAPPER_PIPELINE


1 to 10 of 334 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596964756GWAS1084275_Hcholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1084275 (human)1e-128cholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurement155843122758431228Human
597512601GWAS1608675_Htriglycerides to total lipids in very small VLDL percentage QTL GWAS1608675 (human)3e-24blood VLDL triglyceride amount (VT:0010700)155843122758431228Human
596964753GWAS1084272_Hlow density lipoprotein particle size measurement QTL GWAS1084272 (human)1e-34low density lipoprotein particle size measurement155843122758431228Human
407097419GWAS746395_Hphospholipids:total lipids ratio QTL GWAS746395 (human)4e-114phospholipids:total lipids ratio155843122758431228Human
597525397GWAS1621471_Hphospholipids in medium HDL measurement QTL GWAS1621471 (human)4e-88blood HDL phospholipid amount (VT:0010504)155843122758431228Human
406965323GWAS614299_Hchylomicron measurement, very low density lipoprotein cholesterol measurement, free cholesterol:total lipids ratio QTL GWAS614299 (human)1e-133chylomicron measurement, very low density lipoprotein cholesterol measurement, free cholesterol:total lipids ratio155843122758431228Human
596972958GWAS1092477_H1-docosahexaenoyl-GPE (22:6) measurement QTL GWAS1092477 (human)6e-421-docosahexaenoyl-GPE (22:6) measurement155843122758431228Human
597518230GWAS1614304_Hcholine measurement QTL GWAS1614304 (human)8e-187choline measurement155843122758431228Human
596969370GWAS1088889_Htriglycerides:total lipids ratio, very low density lipoprotein cholesterol measurement QTL GWAS1088889 (human)5e-245triglycerides:total lipids ratio, very low density lipoprotein cholesterol measurement155843122758431228Human
597517202GWAS1613276_Hapolipoprotein A 1 measurement QTL GWAS1613276 (human)2e-120apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)155843122758431228Human

1 to 10 of 334 rows


1 to 20 of 158 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1748372_H GCST90092977 Phospholipids to total lipids ratio in small VLDL 115,082 European ancestry individuals A 0.780287 8E-27 26.097 rs1077835 0.0509926 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1750211_H GCST90093049 Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals A 0.781857 4E-200 199.398 rs1077835 0.151296 phospholipids:total lipids ratio (EFO:0020946)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1756855_H GCST90092973 Free cholesterol to total lipids ratio in small VLDL 115,082 European ancestry individuals A 0.780287 4E-18 17.398 rs1077835 0.0411538 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1757985_H GCST90093029 Cholesterol to total lipids ratio in very small VLDL 115,082 European ancestry individuals A 0.780287 1E-45 45 rs1077835 0.0669234 cholesterol:total lipids ratio (EFO:0020943)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758095_H GCST90093031 Cholesteryl esters to total lipids ratio in very small VLDL 115,082 European ancestry individuals A 0.780287 3E-40 39.523 rs1077835 0.06224 cholesteryl esters:total lipids ratio (EFO:0020944)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758982_H GCST90093033 Free cholesterol to total lipids ratio in very small VLDL 115,082 European ancestry individuals A 0.780287 1E-63 63 rs1077835 0.0835269 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1758985_H GCST90093045 Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL 111,638 European ancestry individuals A 0.781857 1E-133 133 rs1077835 0.12267 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:35213538
GWAS1467578_H GCST001904 HDL cholesterol 1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls A 0.38 2E-14 13.699 rs1077835 0.17 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:23505323
GWAS1778636_H GCST90092879 Triglycerides to total lipids ratio in large VLDL 115,071 European ancestry individuals A 0.780309 5E-245 244.302 rs1077835 0.165985 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1779457_H GCST90092889 Average diameter for LDL particles 115,082 European ancestry individuals A 0.780287 1E-34 34 rs1077835 0.0597262 LDL particle size (OBA:2050113)
 PMID:35213538
GWAS1779959_H GCST90093039 Triglycerides to total lipids ratio in very small VLDL 115,082 European ancestry individuals A 0.780287 9E-35 34.046 rs1077835 0.058111 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:35213538
GWAS1486764_H GCST010244 Triglyceride levels 441,016 European ancestry individuals A 0.779538 3E-86 85.523 rs1077835 0.0473972 triglyceride measurement (EFO:0004530)
 PMID:32203549
GWAS1498317_H GCST008046 Triglyceride levels 9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals ? NR 3E-9 8.523 rs1077835 0.02446351 triglyceride measurement (EFO:0004530)
 PMID:31217584
None Available GCST002897 Triglycerides up to 62,166 European ancestry individuals G 0.22 2E-14 13.699 rs1077835 0.059 triglyceride measurement (EFO:0004530)
 PMID:25961943
GWAS1500578_H GCST008035 High density lipoprotein cholesterol levels 10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals ? NR 5E-25 24.302 rs1077835 1.181832 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:31217584
GWAS1500995_H GCST90018971 Red blood cell count 350,475 European ancestry individuals, 153,512 East Asian ancestry individuals G NR 5E-15 14.302 rs1077835 0.0152 erythrocyte count (EFO:0004305)
 PMID:34594039
GWAS1505177_H GCST90239667 Non-HDL cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 2E-43 42.699 rs1077835 N/A non-high density lipoprotein cholesterol measurement (EFO:0005689)
 PMID:34887591
GWAS1505438_H GCST90264260 Plasma 1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)* levels in chronic kidney disease 4,959 European ancestry individuals G 0.22 3E-61 60.523 rs1077835 0.235 1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) measurement (EFO:0800409)
 PMID:37277652
GWAS1505442_H GCST90264271 Plasma 1-palmitoyl-2-oleoyl-GPE (16:0/18:1) levels in chronic kidney disease 4,959 European ancestry individuals G 0.22 3E-27 26.523 rs1077835 0.185 1-palmitoyl-2-oleoyl-GPE (16:0/18:1) measurement (EFO:0800608)
 PMID:37277652
GWAS1508749_H GCST009045 Triglyceride levels 14,126 African ancestry individuals A 0.434 1E-10 10 rs1077835 0.0759975 triglyceride measurement (EFO:0004530)
 PMID:31675503
1 to 20 of 158 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90025607 GWAS Catalog
  GCST90244481 GWAS Catalog

Note Type Note Reference