GWAS616529_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS616529_H (eosinophil percentage of granulocytes QTL GWAS616529 (human)) Homo sapiens

Symbol: GWAS616529_H
Name: eosinophil percentage of granulocytes QTL GWAS616529 (human)
RGD ID: 406967553
Trait: eosinophil quantity   (VT:0002602)    
LOD Score: Not Available
P Value: 1.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381541,482,225 - 41,482,226RGD_MAPPER_PIPELINEGRCh38
GRCh371541,774,423 - 41,774,424RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS616529_HHumanasthma  IAGPrs1942405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:32296059


Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS616529_HHumaneosinophil quantity  IAGPrs1942405850206Based on the EFO term IDGWAS_CATALOGPMID:27863252

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS616529_HHumaneosinophil percentage of granulocytes  IAGPrs1942405850206 GWAS_CATALOGPMID:27863252

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1321684RTF1RTF1 homolog, Paf1/RNA polymerase II complex component154141709541483563Human
38670436LOC105370790uncharacterized LOC105370790154147942741486369Human


Peak: (rs1942)
Human AssemblyChrPosition (strand)Source
GRCh381541,482,225 - 41,482,226RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
406967553GWAS616529_Heosinophil percentage of granulocytes QTL GWAS616529 (human)1e-12eosinophil quantity (VT:0002602)154148222541482226Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597270652GWAS1366726_Hdiastolic blood pressure QTL GWAS1366726 (human)4e-10diastolic blood pressurediastolic blood pressure (CMO:0000005)154148222541482226Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS616529_H GCST004617 Eosinophil percentage of granulocytes 170,536 European ancestry individuals G 0.5252 1E-12 12 rs1942 0.02536171 eosinophil percentage of granulocytes (EFO:0007996)
 PMID:27863252
None Available GCST010043 Asthma 84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls G 0.54 1E-12 12 rs1942 N/A PMID:32296059
GWAS1366726_H GCST90132904 Diastolic blood pressure 526,001 European ancestry individuals A NR 4E-10 9.398 rs1942 0.1328 diastolic blood pressure (EFO:0006336)
 PMID:35762941
Database
Acc Id
Source(s)
GWAS Catalog GCST004617 GWAS Catalog
  GCST010043 GWAS Catalog

Note Type Note Reference