GWAS612783_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS612783_H (high density lipoprotein cholesterol measurement QTL GWAS612783 (human)) Homo sapiens

Symbol: GWAS612783_H
Name: high density lipoprotein cholesterol measurement QTL GWAS612783 (human)
RGD ID: 406963807
Trait: high density lipoprotein cholesterol measurement
LOD Score: Not Available
P Value: 3.0E-24
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,431,476 - 58,431,477RGD_MAPPER_PIPELINEGRCh38
GRCh371558,723,675 - 58,723,676RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1800588)
Human AssemblyChrPosition (strand)Source
GRCh381558,431,476 - 58,431,477RGD_MAPPER_PIPELINE


1 to 10 of 413 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597455772GWAS1551846_Htriglycerides in medium HDL measurement QTL GWAS1551846 (human)4e-99blood HDL triglyceride amount (VT:0010698)blood free fatty acids level (CMO:0000117)155843147658431477Human
407043137GWAS692113_Htotal lipids in small VLDL QTL GWAS692113 (human)7e-41total lipids in small VLDL155843147658431477Human
597518238GWAS1614312_Hdocosahexaenoic acid to total fatty acids percentage QTL GWAS1614312 (human)5e-36fatty acid amount (VT:0010046)155843147658431477Human
597525400GWAS1621474_Hcholesteryl ester measurement QTL GWAS1621474 (human)3e-32blood lipid amount (VT:0003949)155843147658431477Human
596969373GWAS1088892_Hcholine measurement QTL GWAS1088892 (human)1e-300choline measurement155843147658431477Human
596969372GWAS1088891_Htriglycerides:total lipids ratio, very low density lipoprotein cholesterol measurement QTL GWAS1088891 (human)3e-47triglycerides:total lipids ratio, very low density lipoprotein cholesterol measurement155843147658431477Human
596969375GWAS1088894_Hphospholipids in VLDL measurement QTL GWAS1088894 (human)1e-65phospholipids in VLDL measurement 155843147658431477Human
596969374GWAS1088893_Htriglycerides in small VLDL measurement QTL GWAS1088893 (human)6e-13triglyceride measurement155843147658431477Human
596969371GWAS1088890_Hcholesteryl ester measurement, chylomicron measurement, very low density lipoprotein cholesterol measurement QTL GWAS1088890 (human)3e-13cholesteryl ester measurement, chylomicron measurement, very low density lipoprotein cholesterol measurement155843147658431477Human
406956112GWAS605088_Hlysophosphatidylethanolamine measurement QTL GWAS605088 (human)5e-22lysophosphatidylethanolamine measurement155843147658431477Human

1 to 10 of 413 rows


1 to 20 of 175 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1113583_H GCST009240 Serum metabolite levels (CMS) 6,263 Finnish ancestry men ? NR 1E-15 15 rs1800588 0.05573824 serum metabolite measurement (EFO:0005653)
 PMID:31636271
GWAS1725865_H GCST009368 HDL cholesterol levels x long total sleep time interaction (2df test) 2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls ? NR 6E-88 87.222 rs1800588 0.02121 sleep duration trait (OBA:2040171)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:31719535
GWAS1726211_H GCST009367 HDL cholesterol levels x short total sleep time interaction (2df test) 3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls ? NR 3E-83 82.523 rs1800588 0.02085 sleep duration trait (OBA:2040171)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:31719535
GWAS1664230_H GCST90476426 total cholesterol (minimum, inv-norm transformed) 112,278 African American or Afro-Caribbean individuals C 0.4925 3E-25 24.523 rs1800588 0.0445 total cholesterol measurement (EFO:0004574)
 PMID:39024449
GWAS1664286_H GCST90476423 total cholesterol (mean, inv-norm transformed) 112,265 African American or Afro-Caribbean individuals C 0.4925 1E-33 33 rs1800588 0.0525 total cholesterol measurement (EFO:0004574)
 PMID:39024449
GWAS1664682_H GCST90476434 triglyceride (mean, inv-norm transformed) 107,730 African American or Afro-Caribbean individuals C 0.4908 3E-12 11.523 rs1800588 0.03051 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1664741_H GCST90476419 total cholesterol (maximum, inv-norm transformed) 112,221 African American or Afro-Caribbean individuals C 0.4926 2E-31 30.699 rs1800588 0.0509 total cholesterol measurement (EFO:0004574)
 PMID:39024449
GWAS1675149_H GCST90480717 triglyceride (maximum, inv-norm transformed) 107,605 African American or Afro-Caribbean individuals, 53,373 Hispanic or Latin American individuals, 5,787 East Asian ancestry individuals, 391,247 European ancestry individuals C 0.7061 2E-14 13.699 rs1800588 0.02307 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1738509_H GCST90091665 Postprandial mean diameter of HDL particles null T 0.208652254 6E-9 8.222 rs1800588 0.153889 HDL particle size (OBA:2050115)
 PMID:34610981
GWAS1676891_H GCST90480718 triglyceride (mean, inv-norm transformed) 107,730 African American or Afro-Caribbean individuals, 53,468 Hispanic or Latin American individuals, 5,813 East Asian ancestry individuals, 391,626 European ancestry individuals C 0.7061 5E-19 18.302 rs1800588 0.0273 triglyceride measurement (EFO:0004530)
 PMID:39024449
GWAS1676991_H GCST90480716 total cholesterol (minimum, inv-norm transformed) 112,278 African American or Afro-Caribbean individuals, 54,881 Hispanic or Latin American individuals, 6,014 East Asian ancestry individuals, 397,646 European ancestry individuals C 0.7057 1E-59 59 rs1800588 0.04314 total cholesterol measurement (EFO:0004574)
 PMID:39024449
GWAS1677325_H GCST90480714 total cholesterol (maximum, inv-norm transformed) 112,221 African American or Afro-Caribbean individuals, 54,837 Hispanic or Latin American individuals, 6,013 East Asian ancestry individuals, 397,478 European ancestry individuals C 0.7058 3E-78 77.523 rs1800588 0.05108 total cholesterol measurement (EFO:0004574)
 PMID:39024449
GWAS1677483_H GCST90480715 total cholesterol (mean, inv-norm transformed) 112,265 African American or Afro-Caribbean individuals, 54,876 Hispanic or Latin American individuals, 6,014 East Asian ancestry individuals, 397,615 European ancestry individuals C 0.7057 9E-80 79.046 rs1800588 0.052 total cholesterol measurement (EFO:0004574)
 PMID:39024449
GWAS1754337_H GCST90302162 Total cholesterol levels in chylomicrons and extremely large VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.233 6E-10 9.222 rs1800588 0.0292 total cholesterol measurement (EFO:0004574)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:38448586
GWAS1754839_H GCST90302161 Triglycerides to total lipids ratio in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.2324 3E-47 46.523 rs1800588 0.0672 triglycerides:total lipids ratio (EFO:0020947)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1755152_H GCST90302164 Cholesteryl ester levels in chylomicrons and extremely large VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.233 3E-13 12.523 rs1800588 0.0345 cholesteryl ester measurement (EFO:0010351)
blood VLDL cholesterol amount (OBA:VT0005144)
chylomicron amount (OBA:2050296)
 PMID:38448586
GWAS1756247_H GCST90302143 Free cholesterol to total lipids ratio in very large VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 110,896 European ancestry individuals T 0.2354 8E-46 45.097 rs1800588 0.0719 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1758494_H GCST90302123 Total cholesterol levels in VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.2324 3E-49 48.523 rs1800588 0.0687 total cholesterol measurement (EFO:0004574)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1758640_H GCST90302111 Concentration of small VLDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.2325 2E-34 33.699 rs1800588 0.0571 blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
GWAS1759414_H GCST90302024 Free cholesterol to total lipids ratio in large VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 110,896 European ancestry individuals T 0.235 4E-143 142.398 rs1800588 0.1276 free cholesterol:total lipids ratio (EFO:0020945)
blood VLDL cholesterol amount (OBA:VT0005144)
 PMID:38448586
1 to 20 of 175 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST008035 GWAS Catalog

Note Type Note Reference