GWAS612498_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS612498_H (clopidogrel metabolite measurement QTL GWAS612498 (human)) Homo sapiens

Symbol: GWAS612498_H
Name: clopidogrel metabolite measurement QTL GWAS612498 (human)
RGD ID: 406963522
Trait: clopidogrel metabolite measurement
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38311,750,143 - 11,750,144RGD_MAPPER_PIPELINEGRCh38
GRCh37311,791,617 - 11,791,618RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS612498_HHumanclopidogrel metabolite measurement  IAGPrs147119990405850206 GWAS_CATALOGPMID:28207573
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602301TAMM41TAM41 mitochondrial translocator assembly and maintenance homolog31172189611846885Human

Position Markers

Peak: (rs147119990)
Human AssemblyChrPosition (strand)Source
GRCh38311,750,143 - 11,750,144RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406963522GWAS612498_Hclopidogrel metabolite measurement QTL GWAS612498 (human)2e-09clopidogrel metabolite measurement31175014311750144Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS612498_H GCST004264 Clopidogrel active metabolite levels 513 Amish individuals A 0.01 2E-9 8.699 rs147119990 20.21 clopidogrel metabolite measurement (EFO:0007966)
 PMID:28207573
Database Acc Id Source(s)
GWAS Catalog GCST004264 GWAS Catalog

RGD Curation Notes
Note Type Note Reference