GWAS611609_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS611609_H (rheumatoid arthritis QTL GWAS611609 (human)) Homo sapiens

Symbol: GWAS611609_H
Name: rheumatoid arthritis QTL GWAS611609 (human)
RGD ID: 406962633
Trait: rheumatoid arthritis
LOD Score: Not Available
P Value: 3.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3814104,926,500 - 104,926,501RGD_MAPPER_PIPELINEGRCh38
GRCh3714105,392,837 - 105,392,838RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1347934PLD4phospholipase D family member 414104924879104937785Human

Position Markers

Peak: (rs2582532)
Human AssemblyChrPosition (strand)Source
GRCh3814104,926,500 - 104,926,501RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406961920GWAS610896_Hrheumatoid arthritis QTL GWAS610896 (human)5e-08rheumatoid arthritis14104926500104926501Human
406962633GWAS611609_Hrheumatoid arthritis QTL GWAS611609 (human)0.0000003rheumatoid arthritis14104926500104926501Human
407075945GWAS724921_Hrheumatoid arthritis QTL GWAS724921 (human)0.000007rheumatoid arthritis14104926500104926501Human
407077740GWAS726716_Hrheumatoid arthritis QTL GWAS726716 (human)0.000004rheumatoid arthritis14104926500104926501Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS610896_H GCST002318 Rheumatoid arthritis up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls C 0.73 5E-8 7.302 rs2582532 1.18 rheumatoid arthritis (EFO:0000685)
 PMID:24390342
GWAS611609_H GCST002318 Rheumatoid arthritis up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls C 0.86 3E-7 6.523 rs2582532 1.17 rheumatoid arthritis (EFO:0000685)
 PMID:24390342
GWAS724921_H GCST006959 Rheumatoid arthritis 916 African American cases, 1,392 African American controls, T NR 0.000007 5.155 rs2582532 0.121451 rheumatoid arthritis (EFO:0000685)
 PMID:30423114
GWAS726716_H GCST006959 Rheumatoid arthritis 916 African American cases, 1,392 African American controls, T 0.27 0.000004 5.398 rs2582532 0.14638 rheumatoid arthritis (EFO:0000685)
 PMID:30423114
Database Acc Id Source(s)
GWAS Catalog GCST002318 GWAS Catalog

RGD Curation Notes
Note Type Note Reference