GWAS610276_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS610276_H (glycoprotein endo-alpha-1,2-mannosidase measurement QTL GWAS610276 (human)) Homo sapiens

Symbol: GWAS610276_H
Name: glycoprotein endo-alpha-1,2-mannosidase measurement QTL GWAS610276 (human)
RGD ID: 406961300
Trait: glycoprotein endo-alpha-1,2-mannosidase measurement
LOD Score: Not Available
P Value: 2E-1586
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38695,606,046 - 95,606,047RGD_MAPPER_PIPELINEGRCh38
GRCh37696,053,922 - 96,053,923RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS610276_HHumanglycoprotein endo-alpha-1,2-mannosidase measurement  IAGPrs35772543405850206 GWAS_CATALOGPMID:34648354
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1345544MANEAmannosidase endo-alpha69557753595609452Human

Position Markers

Peak: (rs35772543)
Human AssemblyChrPosition (strand)Source
GRCh38695,606,046 - 95,606,047RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406961300GWAS610276_Hglycoprotein endo-alpha-1,2-mannosidase measurement QTL GWAS610276 (human)2e-1586glycoprotein endo-alpha-1,2-mannosidase measurement69560604695606047Human
1298426BFD3_HBody fluid distribution QTL 3 (human)2.790.01Body fluid distributionimpedance ratio684873647110873647Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS610276_H GCST90247717 Glycoprotein endo-alpha-1,2-mannosidase levels 10,708 European ancestry individuals A 0.08 2E-1586 1585.699 rs35772543 1.606 glycoprotein endo-alpha-1,2-mannosidase measurement (EFO:0801644)
 PMID:34648354
Database Acc Id Source(s)
GWAS Catalog GCST90247717 GWAS Catalog

RGD Curation Notes
Note Type Note Reference