GWAS610141_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS610141_H (breast carcinoma QTL GWAS610141 (human)) Homo sapiens

Symbol: GWAS610141_H
Name: breast carcinoma QTL GWAS610141 (human)
RGD ID: 406961165
Trait: breast carcinoma
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3818,335,500 - 8,335,501RGD_MAPPER_PIPELINEGRCh38
GRCh3718,395,560 - 8,395,561RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
731828SLC45A1solute carrier family 45 member 1183181148344165Human

Position Markers

Peak: (rs7535752)
Human AssemblyChrPosition (strand)Source
GRCh3818,335,500 - 8,335,501RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
406961165GWAS610141_Hbreast carcinoma QTL GWAS610141 (human)0.000005breast carcinoma183355008335501Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS610141_H GCST001879 Breast cancer 3,016 African American cases, 2,745 African American controls ? NR 0.000005 5.302 rs7535752 N/A breast carcinoma (EFO:0000305)
 PMID:23468962
Database Acc Id Source(s)
GWAS Catalog GCST001879 GWAS Catalog

RGD Curation Notes
Note Type Note Reference