GWAS610141_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS610141_H (breast carcinoma QTL GWAS610141 (human)) Homo sapiens

Symbol: GWAS610141_H
Name: breast carcinoma QTL GWAS610141 (human)
RGD ID: 406961165
Trait: mammary gland integrity trait   (VT:0010552)    
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3818,335,500 - 8,335,501RGD_MAPPER_PIPELINEGRCh38
GRCh3718,395,560 - 8,395,561RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS610141_HHumanbreast carcinoma  IAGPrs7535752405850206Based on the EFO term IDGWAS_CATALOGPMID:23468962

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS610141_HHumanBreast carcinoma  IAGPrs7535752405850206Based on the EFO term IDGWAS_CATALOGPMID:23468962

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS610141_HHumanmammary gland integrity trait  IAGPrs7535752405850206 GWAS_CATALOGPMID:23468962

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS610141_HHumanbreast carcinoma  IAGPrs7535752405850206 GWAS_CATALOGPMID:23468962

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731828SLC45A1solute carrier family 45 member 1183181148344165Human


Peak: (rs7535752)
Human AssemblyChrPosition (strand)Source
GRCh3818,335,500 - 8,335,501RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
406961165GWAS610141_Hbreast carcinoma QTL GWAS610141 (human)0.000005mammary gland integrity trait (VT:0010552)183355008335501Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS610141_H GCST001879 Breast cancer 3,016 African American cases, 2,745 African American controls ? NR 0.000005 5.302 rs7535752 N/A breast carcinoma (EFO:0000305)
 PMID:23468962
Database
Acc Id
Source(s)
GWAS Catalog GCST001879 GWAS Catalog

Note Type Note Reference