GWAS609654_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS609654_H (v-set and transmembrane domain-containing protein 4 measurement QTL GWAS609654 (human)) Homo sapiens

Symbol: GWAS609654_H
Name: v-set and transmembrane domain-containing protein 4 measurement QTL GWAS609654 (human)
RGD ID: 406960678
Trait: v-set and transmembrane domain-containing protein 4 measurement
LOD Score: Not Available
P Value: 2.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38196,713,164 - 6,713,165RGD_MAPPER_PIPELINEGRCh38
GRCh37196,713,175 - 6,713,176RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS609654_HHumanv-set and transmembrane domain-containing protein 4 measurement  IAGPrs11085197405850206 GWAS_CATALOGPMID:34648354
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735504C3complement C31966777046720650Human

Position Markers

Peak: (rs11085197)
Human AssemblyChrPosition (strand)Source
GRCh38196,713,164 - 6,713,165RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298499UAE1_HUrinary albumin excretion QTL 1 (human)2.730.0009Urinary albumin excretionurine albumin:creatinine ratio (ACR)19116075902Human
406953824GWAS602800_HRNA-binding protein 24 measurement QTL GWAS602800 (human)6e-14RNA-binding protein 24 measurement1967131646713165Human
406961104GWAS610080_Htyrosine-protein kinase ZAP-70 measurement QTL GWAS610080 (human)3e-12tyrosine-protein kinase ZAP-70 measurement1967131646713165Human
1643451SLIPL6_HSerum lipid level QTL 6 (human)2.190.0008Lipid level19116075902Human
1581534BP76_HBlood pressure QTL 76 (human)20.001Blood pressurepulse pressure19116075902Human
1581535BP65_HBlood pressure QTL 65 (human)3.10.001Blood pressurepulse pressure19116075902Human
406960678GWAS609654_Hv-set and transmembrane domain-containing protein 4 measurement QTL GWAS609654 (human)2e-12v-set and transmembrane domain-containing protein 4 measurement1967131646713165Human
406960619GWAS609595_Hprotein measurement QTL GWAS609595 (human)3e-24protein measurement1967131646713165Human
2314591INSUL4_HInsulin level QTL 4 (human)3.80.000038Insulin levelfasting19116075902Human
1298476BP3_HBlood pressure QTL 3 (human)2.4Blood pressuresystolic19116075902Human
407172795GWAS821771_Hblood protein measurement QTL GWAS821771 (human)2e-19blood protein measurementblood protein measurement (CMO:0000028)1967131646713165Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS602800_H GCST90249252 RNA-binding protein 24 levels 10,708 European ancestry individuals C 0.2 6E-14 13.222 rs11085197 0.129 RNA-binding protein 24 measurement (EFO:0802030)
 PMID:34648354
GWAS609595_H GCST90250203 Protein WFDC10B levels 10,708 European ancestry individuals C 0.2 3E-24 23.523 rs11085197 0.175 protein measurement (EFO:0004747)
 PMID:34648354
GWAS609654_H GCST90250194 V-set and transmembrane domain-containing protein 4 levels 10,708 European ancestry individuals C 0.2 2E-12 11.699 rs11085197 0.121 v-set and transmembrane domain-containing protein 4 measurement (EFO:0803247)
 PMID:34648354
GWAS610080_H GCST90250047 Tyrosine-protein kinase ZAP-70 levels 10,708 European ancestry individuals C 0.2 3E-12 11.523 rs11085197 0.118 tyrosine-protein kinase ZAP-70 measurement (EFO:0020833)
 PMID:34648354
GWAS821771_H GCST90086788 Serum levels of protein TNFRSF14 5,347 Icelandic ancestry individuals C 0.2308 2E-19 18.699 rs11085197 0.183239 blood protein measurement (EFO:0007937)
 PMID:35078996
Database Acc Id Source(s)
GWAS Catalog GCST90250194 GWAS Catalog

RGD Curation Notes
Note Type Note Reference