GWAS609189_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS609189_H (aging QTL GWAS609189 (human)) Homo sapiens

Symbol: GWAS609189_H
Name: aging QTL GWAS609189 (human)
RGD ID: 406960213
Trait: aging
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38168,070,885 - 68,070,886RGD_MAPPER_PIPELINEGRCh38
GRCh37168,536,568 - 68,536,569RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS609189_HHumanaging  IAGPrs59689077405850206 GWAS_CATALOGPMID:34187551
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
6769446GNG12-AS1GNG12, DIRAS3 and WLS antisense RNA 116783228868202987Human

Position Markers

Peak: (rs59689077)
Human AssemblyChrPosition (strand)Source
GRCh38168,070,885 - 68,070,886RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2314561GLUCO47_HGlucose level QTL 47 (human)1.1Glucose level14477336070773360Human
1578602LDLPS21_HLow density lipoprotein particle size QTL 21 (human)2.050.00037LDL particle size15253110578531105Human
1578620LDLPS20_HLow density lipoprotein particle size QTL 21 (human)2.040.00046LDL particle size15253110578531105Human
406960213GWAS609189_Haging QTL GWAS609189 (human)3e-10aging16807088568070886Human
1578594LDLPS19_HLow density lipoprotein particle size QTL 19 (human)2.560.00009LDL particle size15253110578531105Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS609189_H GCST90014302 Intrinsic epigenetic age acceleration 34,461 European ancestry individuals, 6,148 African American individuals ? NR 3E-10 9.523 rs59689077 N/A aging (EFO:0022597)
 PMID:34187551
Database Acc Id Source(s)
GWAS Catalog GCST90014302 GWAS Catalog

RGD Curation Notes
Note Type Note Reference