GWAS608599_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS608599_H (monocyte percentage of leukocytes QTL GWAS608599 (human)) Homo sapiens

Symbol: GWAS608599_H
Name: monocyte percentage of leukocytes QTL GWAS608599 (human)
RGD ID: 406959623
Trait: monocyte percentage of leukocytes
Measurement Type: blood monocyte count to total leukocyte count ratio   (CMO:0000374)    
LOD Score: Not Available
P Value: 5.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh383172,516,227 - 172,516,228RGD_MAPPER_PIPELINEGRCh38
GRCh373172,234,017 - 172,234,018RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS608599_HHumanblood monocyte count to total leukocyte count ratio  IAGPrs142552223405850206Based on the EFO term IDGWAS_CATALOGPMID:27863252

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS608599_HHumanmonocyte percentage of leukocytes  IAGPrs142552223405850206 GWAS_CATALOGPMID:27863252
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344832TNFSF10TNF superfamily member 103172505508172523430Human

Position Markers

Peak: (rs142552223)
Human AssemblyChrPosition (strand)Source
GRCh383172,516,227 - 172,516,228RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406959623GWAS608599_Hmonocyte percentage of leukocytes QTL GWAS608599 (human)5e-09monocyte percentage of leukocytesblood monocyte count to total leukocyte count ratio (CMO:0000374)3172516227172516228Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS608599_H GCST004609 Monocyte percentage of white cells 170,494 European ancestry individuals A 0.0402 5E-9 8.302 rs142552223 0.05353311 monocyte percentage of leukocytes (EFO:0007989)
 PMID:27863252
Database Acc Id Source(s)
GWAS Catalog GCST004609 GWAS Catalog

RGD Curation Notes
Note Type Note Reference