GWAS607574_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS607574_H (erythrocyte count QTL GWAS607574 (human)) Homo sapiens

Symbol: GWAS607574_H
Name: erythrocyte count QTL GWAS607574 (human)
RGD ID: 406958598
Trait: erythrocyte count
Measurement Type: red blood cell count   (CMO:0000025)    
LOD Score: Not Available
P Value: 4.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38115,555,045 - 15,555,046RGD_MAPPER_PIPELINEGRCh38
GRCh37115,881,540 - 15,881,541RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS607574_HHumanred blood cell count  IAGPrs34696543405850206Based on the EFO term IDGWAS_CATALOGPMID:38116116

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS607574_HHumanerythrocyte count  IAGPrs34696543405850206 GWAS_CATALOGPMID:38116116
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603691DNAJC16DnaJ heat shock protein family (Hsp40) member C1611552684815571733Human

Position Markers

Peak: (rs34696543)
Human AssemblyChrPosition (strand)Source
GRCh38115,555,045 - 15,555,046RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406958598GWAS607574_Herythrocyte count QTL GWAS607574 (human)4e-12erythrocyte countred blood cell count (CMO:0000025)11555504515555046Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS607574_H GCST90278641 Red blood cell count 92,615 Taiwanese ancestry individuals ? NR 4E-12 11.398 rs34696543 N/A erythrocyte count (EFO:0004305)
 PMID:38116116
Database Acc Id Source(s)
GWAS Catalog GCST90278641 GWAS Catalog

RGD Curation Notes
Note Type Note Reference