GWAS605607_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS605607_H (mean arterial pressure QTL GWAS605607 (human)) Homo sapiens

Symbol: GWAS605607_H
Name: mean arterial pressure QTL GWAS605607 (human)
RGD ID: 406956631
Trait: mean arterial pressure
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381653,768,582 - 53,768,583RGD_MAPPER_PIPELINEGRCh38
GRCh371653,802,494 - 53,802,495RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1625089FTOFTO alpha-ketoglutarate dependent dioxygenase165370396354121941Human
151673199LOC124903691uncharacterized LOC124903691165374155253768727Human


Peak: (rs11642015)
Human AssemblyChrPosition (strand)Source
GRCh381653,768,582 - 53,768,583RGD_MAPPER_PIPELINE


1 to 10 of 144 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407077697GWAS726673_Hbody mass index QTL GWAS726673 (human)2e-73body mass index165376858253768583Human
597027222GWAS1123296_Hsystolic blood pressure QTL GWAS1123296 (human)2e-12systolic blood pressuresystolic blood pressure (CMO:0000004)165376858253768583Human
407077700GWAS726676_Hbody mass index QTL GWAS726676 (human)7e-217body mass index165376858253768583Human
406889289GWAS538265_Hsmoking status measurement, diastolic blood pressure QTL GWAS538265 (human)6e-09smoking status measurement, diastolic blood pressure165376858253768583Human
406986059GWAS635035_Hage at menarche QTL GWAS635035 (human)1e-57age at menarche165376858253768583Human
597616020GWAS1672880_Hnephritis QTL GWAS1672880 (human)2e-11chronic kidney disease165376858253768583Human
597614482GWAS1671342_Hnail anomaly QTL GWAS1671342 (human)7e-13nail anomaly165376858253768583Human
407363400GWAS1012376_Hbody mass index QTL GWAS1012376 (human)2e-213body mass index165376858253768583Human
597608337GWAS1665197_Hbody mass index QTL GWAS1665197 (human)4e-55body mass indexbody mass index (BMI) (CMO:0000105)165376858253768583Human
597071750GWAS1167824_Hblood urea nitrogen measurement QTL GWAS1167824 (human)4e-15blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)165376858253768583Human

1 to 10 of 144 rows


1 to 20 of 78 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1115202_H GCST006195 Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) 14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers ? NR 1E-20 20 rs11642015 N/A smoking status measurement (EFO:0006527)
systolic blood pressure (EFO:0006335)
PMID:29455858
GWAS1115284_H GCST006193 Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test) 14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers ? NR 6E-9 8.222 rs11642015 N/A smoking status measurement (EFO:0006527)
diastolic blood pressure (EFO:0006336)
PMID:29455858
GWAS1115335_H GCST006193 Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test) 14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers ? NR 3E-11 10.523 rs11642015 N/A smoking status measurement (EFO:0006527)
diastolic blood pressure (EFO:0006336)
PMID:29455858
GWAS1115397_H GCST006195 Systolic blood pressure x smoking status (current vs non-current) interaction (2df test) 14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers ? NR 6E-14 13.222 rs11642015 N/A smoking status measurement (EFO:0006527)
systolic blood pressure (EFO:0006335)
PMID:29455858
GWAS1115565_H GCST006190 Diastolic blood pressure x smoking status (ever vs never) interaction (2df test) 43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers ? NR 4E-8 7.398 rs11642015 N/A smoking status measurement (EFO:0006527)
diastolic blood pressure (EFO:0006336)
PMID:29455858
GWAS1115802_H GCST006192 Systolic blood pressure x smoking status (ever vs never) interaction (2df test) 43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers ? NR 1E-13 13 rs11642015 N/A smoking status measurement (EFO:0006527)
systolic blood pressure (EFO:0006335)
PMID:29455858
GWAS1115882_H GCST006190 Diastolic blood pressure x smoking status (ever vs never) interaction (2df test) 43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers ? NR 2E-10 9.699 rs11642015 N/A smoking status measurement (EFO:0006527)
diastolic blood pressure (EFO:0006336)
PMID:29455858
GWAS1115946_H GCST006192 Systolic blood pressure x smoking status (ever vs never) interaction (2df test) 43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers ? NR 4E-20 19.398 rs11642015 N/A smoking status measurement (EFO:0006527)
systolic blood pressure (EFO:0006335)
PMID:29455858
GWAS1635265_H GCST90475763 Morbid obesity (PheCode 278.11) 5,871 Hispanic or Latin American cases, 51,265 Hispanic or Latin American controls C 0.7346 1E-14 14 rs11642015 0.1714 morbid obesity (EFO:0001074)
PMID:39024449
GWAS1069042_H GCST007986 Ease of getting up in the morning 385,949 European ancestry individuals T 0.4041 6E-11 10.222 rs11642015 0.0114 chronotype measurement (EFO:0008328)
PMID:30804565
GWAS1123296_H GCST007703 Systolic blood pressure 130,777 Japanese ancestry individuals T 0.2054 2E-12 11.699 rs11642015 0.5779 systolic blood pressure (EFO:0006335)
PMID:30487518
GWAS1123586_H GCST007706 Mean arterial pressure 130,777 Japanese ancestry individuals T 0.2054 1E-9 9 rs11642015 0.3503 mean arterial pressure (EFO:0006340)
PMID:30487518
GWAS1645542_H GCST90475790 Anemia of chronic disease (PheCode 285.2) 15,958 European ancestry cases, 422,013 European ancestry controls C 0.5974 2E-14 13.699 rs11642015 0.08794 anemia (phenotype) (EFO:0004272)
PMID:39024449
GWAS1646484_H GCST90475983 Heart failure with reduced EF [Systolic or combined heart failure] (PheCode 428.3) 31,220 European ancestry cases, 407,213 European ancestry controls C 0.5973 2E-18 17.699 rs11642015 0.07105 systolic heart failure (EFO:1001207)
PMID:39024449
GWAS1646711_H GCST90476257 Symptoms and disorders of the joints (PheCode 741) 45,775 European ancestry cases, 356,128 European ancestry controls C 0.5974 3E-14 13.523 rs11642015 0.05303 Arthropathy (HP:0003040)
PMID:39024449
GWAS1646864_H GCST90479885 Type 2 diabetes (PheCode 250.2) 51,551 African American or Afro-Caribbean cases, 64,463 African American or Afro-Caribbean controls, 22,274 Hispanic or Latin American cases, 35,406 Hispanic or Latin American controls, 2,272 East Asian ancestry cases, 4,333 East Asian ancestry controls, 154,194 European ancestry cases, 278,454 European ancestry controls C 0.6713 2E-95 94.699 rs11642015 0.1153 PMID:39024449
GWAS1647628_H GCST90479765 Dermatophytosis of nail (PheCode 110.11) 28,312 African American or Afro-Caribbean cases, 82,778 African American or Afro-Caribbean controls, 10,074 Hispanic or Latin American cases, 44,970 Hispanic or Latin American controls, 450 East Asian ancestry cases, 6,087 East Asian ancestry controls, 74,612 European ancestry cases, 343,052 European ancestry controls C 0.6711 2E-38 37.699 rs11642015 0.0763 PMID:39024449
GWAS1133760_H GCST007705 Pulse pressure 130,777 Japanese ancestry individuals T 0.1951 3E-10 9.523 rs11642015 0.3531 pulse pressure measurement (EFO:0005763)
PMID:30487518
GWAS1134106_H GCST007704 Diastolic blood pressure 130,777 Japanese ancestry individuals T 0.1951 0.000003 5.523 rs11642015 0.2406 diastolic blood pressure (EFO:0006336)
PMID:30487518
GWAS1647900_H GCST90475924 Hypertensive heart and/or renal disease (PheCode 401.2) 60,962 European ancestry cases, 358,617 European ancestry controls C 0.5979 3E-25 24.523 rs11642015 0.06254 kidney disease (EFO:0003086)
PMID:39024449
1 to 20 of 78 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST007706 GWAS Catalog
  GCST90310296 GWAS Catalog

Note Type Note Reference