GWAS594184_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS594184_H (ectonucleotide pyrophosphatase/phosphodiesterase family member 5 measurement QTL GWAS594184 (human)) Homo sapiens

Symbol: GWAS594184_H
Name: ectonucleotide pyrophosphatase/phosphodiesterase family member 5 measurement QTL GWAS594184 (human)
RGD ID: 406945208
Trait: ectonucleotide pyrophosphatase/phosphodiesterase family member 5 measurement
LOD Score: Not Available
P Value: 8.0E-61
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38646,169,012 - 46,169,013RGD_MAPPER_PIPELINEGRCh38
GRCh37646,136,749 - 46,136,750RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS594184_HHumanectonucleotide pyrophosphatase/phosphodiesterase family member 5 measurement  IAGPrs3806993405850206 GWAS_CATALOGPMID:34648354
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1349666ENPP5ectonucleotide pyrophosphatase/phosphodiesterase family member 564615918546170980Human

Position Markers

Peak: (rs3806993)
Human AssemblyChrPosition (strand)Source
GRCh38646,169,012 - 46,169,013RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406945208GWAS594184_Hectonucleotide pyrophosphatase/phosphodiesterase family member 5 measurement QTL GWAS594184 (human)8e-61ectonucleotide pyrophosphatase/phosphodiesterase family member 5 measurement64616901246169013Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS594184_H GCST90247463 Ectonucleotide pyrophosphatase/phosphodiesterase family member 5 levels 10,708 European ancestry individuals T 0.85 8E-61 60.097 rs3806993 0.283 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 measurement (EFO:0801560)
 PMID:34648354
Database Acc Id Source(s)
GWAS Catalog GCST90247463 GWAS Catalog

RGD Curation Notes
Note Type Note Reference