GWAS594122_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS594122_H (hematocrit QTL GWAS594122 (human)) Homo sapiens

Symbol: GWAS594122_H
Name: hematocrit QTL GWAS594122 (human)
RGD ID: 406945146
Trait: hematocrit
Measurement Type: hematocrit   (CMO:0000037)    
LOD Score: Not Available
P Value: 3.0E-26
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38312,329,583 - 12,329,584RGD_MAPPER_PIPELINEGRCh38
GRCh37312,371,082 - 12,371,083RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS594122_HHumanhematocrit  IAGPrs12496005405850206Based on the EFO term IDGWAS_CATALOGPMID:32888493

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS594122_HHumanhematocrit  IAGPrs12496005405850206 GWAS_CATALOGPMID:32888493
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
hematocrit  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69168PPARGperoxisome proliferator activated receptor gamma31228736812434344Human

Position Markers

Peak: (rs12496005)
Human AssemblyChrPosition (strand)Source
GRCh38312,329,583 - 12,329,584RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
406945146GWAS594122_Hhematocrit QTL GWAS594122 (human)3e-26hematocrithematocrit (CMO:0000037)31232958312329584Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS594122_H GCST90002304 Hematocrit 562,259 European ancestry individuals C 0.24294 3E-26 25.523 rs12496005 0.022827 hematocrit (EFO:0004348)
 PMID:32888493
Database Acc Id Source(s)
GWAS Catalog GCST90002304 GWAS Catalog

RGD Curation Notes
Note Type Note Reference