GWAS590938_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS590938_H (brain aneurysm QTL GWAS590938 (human)) Homo sapiens

Symbol: GWAS590938_H
Name: brain aneurysm QTL GWAS590938 (human)
RGD ID: 406941962
Trait: brain aneurysm
LOD Score: Not Available
P Value: 4.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38113,821,912 - 13,821,913RGD_MAPPER_PIPELINEGRCh38
GRCh37114,148,407 - 14,148,408RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348506PRDM2PR/SET domain 211370018813825079Human

Position Markers

Peak: (rs61775135)
Human AssemblyChrPosition (strand)Source
GRCh38113,821,912 - 13,821,913RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406941962GWAS590938_Hbrain aneurysm QTL GWAS590938 (human)4e-13brain aneurysm11382191213821913Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS590938_H GCST007354 Intracranial aneurysm 250 Korean ancestry cases, 296 Korean ancestry controls C 0.5900000000000001 4E-13 12.398 rs61775135 3.125 brain aneurysm (EFO:0003870)
PMID:30823506
Database Acc Id Source(s)
GWAS Catalog GCST007354 GWAS Catalog

RGD Curation Notes
Note Type Note Reference