GWAS580642_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS580642_H (body fat distribution QTL GWAS580642 (human)) Homo sapiens

Symbol: GWAS580642_H
Name: body fat distribution QTL GWAS580642 (human)
RGD ID: 406931666
Trait: body fat distribution
Measurement Type: body fat morphological measurement   (CMO:0000089)    
LOD Score: Not Available
P Value: 2.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38314,103,134 - 14,103,135RGD_MAPPER_PIPELINEGRCh38
GRCh37314,144,634 - 14,144,635RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS580642_HHumanbody fat morphological measurement  IAGPrs2607733405850206Based on the EFO term IDGWAS_CATALOGPMID:30664634

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS580642_HHumanbody fat distribution  IAGPrs2607733405850206 GWAS_CATALOGPMID:30664634
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs2607733)
Human AssemblyChrPosition (strand)Source
GRCh38314,103,134 - 14,103,135RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406931666GWAS580642_Hbody fat distribution QTL GWAS580642 (human)0.0000002body fat distributionbody fat morphological measurement (CMO:0000089)31410313414103135Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS580642_H GCST007293 Body fat distribution (arm fat ratio) 55,006 British ancestry males, 61,132 British ancestry females T 0.417801 2E-7 6.699 rs2607733 0.007537 body fat distribution (EFO:0004341)
 PMID:30664634
Database Acc Id Source(s)
GWAS Catalog GCST007293 GWAS Catalog

RGD Curation Notes
Note Type Note Reference