GWAS580417_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS580417_H (C-reactive protein measurement QTL GWAS580417 (human)) Homo sapiens

Symbol: GWAS580417_H
Name: C-reactive protein measurement QTL GWAS580417 (human)
RGD ID: 406931441
Trait: C-reactive protein measurement
Measurement Type: blood C-reactive protein level   (CMO:0003160)    
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381552,780,476 - 52,780,477RGD_MAPPER_PIPELINEGRCh38
GRCh371553,072,673 - 53,072,674RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS580417_HHumanblood C-reactive protein level  IAGPrs10518694405850206Based on the EFO term IDGWAS_CATALOGPMID:36376304

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS580417_HHumanC-reactive protein measurement  IAGPrs10518694405850206 GWAS_CATALOGPMID:36376304
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
732947ONECUT1one cut homeobox 1155275505352790336Human

Position Markers

Peak: (rs10518694)
Human AssemblyChrPosition (strand)Source
GRCh381552,780,476 - 52,780,477RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
406931441GWAS580417_HC-reactive protein measurement QTL GWAS580417 (human)2e-08C-reactive protein measurementblood C-reactive protein level (CMO:0003160)155278047652780477Human
407045936GWAS694912_Hbody mass index QTL GWAS694912 (human)3e-09body mass indexbody mass index (BMI) (CMO:0000105)155278047652780477Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS580417_H GCST90179146 C-reactive protein levels (MTAG) 575,531 European ancestry individuals A NR 2E-8 7.699 rs10518694 0.016032 C-reactive protein measurement (EFO:0004458)
 PMID:36376304
GWAS694912_H GCST009871 Body mass index 457,822 European ancestry individuals ? NR 3E-9 8.523 rs10518694 N/A body mass index (EFO:0004340)
 PMID:31669095
Database Acc Id Source(s)
GWAS Catalog GCST90179146 GWAS Catalog

RGD Curation Notes
Note Type Note Reference