GWAS579654_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS579654_H (C-reactive protein measurement QTL GWAS579654 (human)) Homo sapiens

Symbol: GWAS579654_H
Name: C-reactive protein measurement QTL GWAS579654 (human)
RGD ID: 406930678
Trait: C-reactive protein measurement
Measurement Type: blood C-reactive protein level   (CMO:0003160)    
LOD Score: Not Available
P Value: 2.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381560,660,398 - 60,660,399RGD_MAPPER_PIPELINEGRCh38
GRCh371560,952,597 - 60,952,598RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS579654_HHumanblood C-reactive protein level  IAGPrs974066405850206Based on the EFO term IDGWAS_CATALOGPMID:36376304

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS579654_HHumanC-reactive protein measurement  IAGPrs974066405850206 GWAS_CATALOGPMID:36376304
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1318175RORARAR related orphan receptor A156048828461229302Human
38614146LOC105370846uncharacterized LOC105370846156063215160662785Human

Position Markers

Peak: (rs974066)
Human AssemblyChrPosition (strand)Source
GRCh381560,660,398 - 60,660,399RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
406930678GWAS579654_HC-reactive protein measurement QTL GWAS579654 (human)2e-11C-reactive protein measurementblood C-reactive protein level (CMO:0003160)156066039860660399Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS579654_H GCST90179146 C-reactive protein levels (MTAG) 575,531 European ancestry individuals A NR 2E-11 10.699 rs974066 0.01409 C-reactive protein measurement (EFO:0004458)
 PMID:36376304
Database Acc Id Source(s)
GWAS Catalog GCST90179146 GWAS Catalog

RGD Curation Notes
Note Type Note Reference