GWAS574095_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS574095_H (blood protein measurement QTL GWAS574095 (human)) Homo sapiens

Symbol: GWAS574095_H
Name: blood protein measurement QTL GWAS574095 (human)
RGD ID: 406925119
Trait: blood protein measurement
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 8.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38196,696,783 - 6,696,784RGD_MAPPER_PIPELINEGRCh38
GRCh37196,696,794 - 6,696,795RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS574095_HHumanblood protein measurement  IAGPrs11569479405850206Based on the EFO term IDGWAS_CATALOGPMID:30072576

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS574095_HHumanblood protein measurement  IAGPrs11569479405850206 GWAS_CATALOGPMID:30072576
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735504C3complement C31966777046720650Human

Position Markers

Peak: (rs11569479)
Human AssemblyChrPosition (strand)Source
GRCh38196,696,783 - 6,696,784RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298499UAE1_HUrinary albumin excretion QTL 1 (human)2.730.0009Urinary albumin excretionurine albumin:creatinine ratio (ACR)19116075902Human
1643451SLIPL6_HSerum lipid level QTL 6 (human)2.190.0008Lipid level19116075902Human
406945602GWAS594578_HER membrane protein complex subunit 4 measurement QTL GWAS594578 (human)4e-117ER membrane protein complex subunit 4 measurement1966967836696784Human
1581534BP76_HBlood pressure QTL 76 (human)20.001Blood pressurepulse pressure19116075902Human
1581535BP65_HBlood pressure QTL 65 (human)3.10.001Blood pressurepulse pressure19116075902Human
407199612GWAS848588_Hcomplement C3 measurement QTL GWAS848588 (human)6e-17complement C3 measurementblood complement C3a des Arg level (CMO:0003053)1966967836696784Human
2314591INSUL4_HInsulin level QTL 4 (human)3.80.000038Insulin levelfasting19116075902Human
406925119GWAS574095_Hblood protein measurement QTL GWAS574095 (human)8e-16blood protein measurementblood protein measurement (CMO:0000028)1966967836696784Human
407037356GWAS686332_Hblood protein measurement QTL GWAS686332 (human)1e-08blood protein measurementblood protein measurement (CMO:0000028)1966967836696784Human
1298476BP3_HBlood pressure QTL 3 (human)2.4Blood pressuresystolic19116075902Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS574095_H GCST006585 Blood protein levels 3,200 European ancestry individuals T 0.86421875 8E-16 15.097 rs11569479 0.29383227 blood protein measurement (EFO:0007937)
 PMID:30072576
GWAS594578_H GCST90247444 ER membrane protein complex subunit 4 levels 10,708 European ancestry individuals T 0.86 4E-117 116.398 rs11569479 0.435 ER membrane protein complex subunit 4 measurement (EFO:0801580)
 PMID:34648354
GWAS686332_H GCST006585 Blood protein levels 3,200 European ancestry individuals T 0.86421875 1E-8 8 rs11569479 0.20976445 blood protein measurement (EFO:0007937)
 PMID:30072576
GWAS848588_H GCST90089212 Serum levels of protein C3 5,362 Icelandic ancestry individuals C 0.1325 6E-17 16.222 rs11569479 0.234444 complement C3 measurement (EFO:0004983)
 PMID:35078996
Database Acc Id Source(s)
GWAS Catalog GCST006585 GWAS Catalog

RGD Curation Notes
Note Type Note Reference