GWAS573588_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS573588_H (body height QTL GWAS573588 (human)) Homo sapiens

Symbol: GWAS573588_H
Name: body height QTL GWAS573588 (human)
RGD ID: 406924612
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38120,720,599 - 20,720,600RGD_MAPPER_PIPELINEGRCh38
GRCh37121,047,092 - 21,047,093RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS573588_HHumanbody height  IAGPrs671905405850206Based on the EFO term IDGWAS_CATALOGPMID:37106081

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS573588_HHumanbody height  IAGPrs671905405850206Based on the EFO term IDGWAS_CATALOGPMID:37106081

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS573588_HHumanbody height  IAGPrs671905405850206 GWAS_CATALOGPMID:37106081
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602949SH2D5SH2 domain containing 512071973120732703Human

Position Markers

Peak: (rs671905)
Human AssemblyChrPosition (strand)Source
GRCh38120,720,599 - 20,720,600RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406924612GWAS573588_Hbody height QTL GWAS573588 (human)1e-08body height (VT:0001253)body height (CMO:0000106)12072059920720600Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS573588_H GCST90267284 Height (standard GWA) 283,749 European ancestry individuals A NR 1E-8 8 rs671905 0.10548 body height (EFO:0004339)
 PMID:37106081
Database Acc Id Source(s)
GWAS Catalog GCST90267284 GWAS Catalog

RGD Curation Notes
Note Type Note Reference