GWAS563822_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS563822_H (facial morphology QTL GWAS563822 (human)) Homo sapiens

Symbol: GWAS563822_H
Name: facial morphology QTL GWAS563822 (human)
RGD ID: 406914846
Trait: facial morphology trait   (VT:0003743)    
LOD Score: Not Available
P Value: 5.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38118,793,651 - 18,793,652RGD_MAPPER_PIPELINEGRCh38
GRCh37119,120,145 - 19,120,146RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS563822_HHumanfacial morphology trait  IAGPrs34914165405850206Based on the EFO term IDGWAS_CATALOGPMID:35313536

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS563822_HHumanfacial morphology  IAGPrs34914165405850206 GWAS_CATALOGPMID:35313536
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
155639467LOC127267851H3K4me1 hESC enhancer GRCh37_chr1:19119691-1912019011879319718793696Human

Position Markers

Peak: (rs34914165)
Human AssemblyChrPosition (strand)Source
GRCh38118,793,651 - 18,793,652RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
406914846GWAS563822_Hfacial morphology QTL GWAS563822 (human)0.0000005facial morphology trait (VT:0003743)11879365118793652Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS563822_H GCST90104593 Facial wrinkles 730 Korean ancestry individuals C NR 5E-7 6.302 rs34914165 2.083 facial morphology (EFO:0004743)
 PMID:35313536
Database Acc Id Source(s)
GWAS Catalog GCST90104593 GWAS Catalog

RGD Curation Notes
Note Type Note Reference