GWAS563595_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS563595_H (facial pigmentation measurement QTL GWAS563595 (human)) Homo sapiens

Symbol: GWAS563595_H
Name: facial pigmentation measurement QTL GWAS563595 (human)
RGD ID: 406914619
Trait: facial pigmentation measurement
LOD Score: Not Available
P Value: 9.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38985,733,443 - 85,733,444RGD_MAPPER_PIPELINEGRCh38
GRCh37988,348,358 - 88,348,359RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS563595_HHumanfacial pigmentation measurement  IAGPrs56211720405850206 GWAS_CATALOGPMID:35313536
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1314853AGTPBP1ATP/GTP binding carboxypeptidase 198554653985805483Human

Position Markers

Peak: (rs56211720)
Human AssemblyChrPosition (strand)Source
GRCh38985,733,443 - 85,733,444RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406914619GWAS563595_Hfacial pigmentation measurement QTL GWAS563595 (human)0.000009facial pigmentation measurement98573344385733444Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS563595_H GCST90104590 Facial skin melanin 730 Korean ancestry individuals A NR 0.000009 5.046 rs56211720 9.685 facial pigmentation measurement (EFO:0006942)
 PMID:35313536
Database Acc Id Source(s)
GWAS Catalog GCST90104590 GWAS Catalog

RGD Curation Notes
Note Type Note Reference