GWAS561985_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS561985_H (unipolar depression, bipolar disorder, schizophrenia, sex interaction measurement QTL GWAS561985 (human)) Homo sapiens

Symbol: GWAS561985_H
Name: unipolar depression, bipolar disorder, schizophrenia, sex interaction measurement QTL GWAS561985 (human)
RGD ID: 406913009
Trait: unipolar depression, bipolar disorder, schizophrenia, sex interaction measurement
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,883,029 - 58,883,030RGD_MAPPER_PIPELINEGRCh38
GRCh371559,175,228 - 59,175,229RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Depression  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1605637SLTMSAFB like transcription modulator155887905058933679Human

Position Markers

Peak: (rs11858989)
Human AssemblyChrPosition (strand)Source
GRCh381558,883,029 - 58,883,030RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
596973893GWAS1093412_Hbipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder QTL GWAS1093412 (human)0.000001bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder155888302958883030Human
406913009GWAS561985_Hunipolar depression, bipolar disorder, schizophrenia, sex interaction measurement QTL GWAS561985 (human)0.000005unipolar depression, bipolar disorder, schizophrenia, sex interaction measurement155888302958883030Human
596974790GWAS1094309_Hbipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder QTL GWAS1094309 (human)0.000005bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder155888302958883030Human
597421455GWAS1517529_Hbipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder QTL GWAS1517529 (human)0.000005bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder155888302958883030Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
406913252GWAS562228_Hunipolar depression, bipolar disorder, schizophrenia, sex interaction measurement QTL GWAS562228 (human)0.000001unipolar depression, bipolar disorder, schizophrenia, sex interaction measurement155888302958883030Human
597424046GWAS1520120_Hbipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder QTL GWAS1520120 (human)0.000001bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder155888302958883030Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1517529_H GCST012293 Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df) 31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls T NR 0.000005 5.302 rs11858989 N/A sex interaction measurement (EFO:0008343)
 PMID:34099189
GWAS1520120_H GCST012299 Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df) 31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls T NR 0.000001 6 rs11858989 N/A sex interaction measurement (EFO:0008343)
 PMID:34099189
Database Acc Id Source(s)
GWAS Catalog GCST012293 GWAS Catalog

RGD Curation Notes
Note Type Note Reference