GWAS561534_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS561534_H (unipolar depression, bipolar disorder, schizophrenia QTL GWAS561534 (human)) Homo sapiens

Symbol: GWAS561534_H
Name: unipolar depression, bipolar disorder, schizophrenia QTL GWAS561534 (human)
RGD ID: 406912558
Trait: unipolar depression, bipolar disorder, schizophrenia
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38976,017,293 - 76,017,294RGD_MAPPER_PIPELINEGRCh38
GRCh37978,632,209 - 78,632,210RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732125PCSK5proprotein convertase subtilisin/kexin type 597588980976362975Human


Peak: (rs1890558)
Human AssemblyChrPosition (strand)Source
GRCh38976,017,293 - 76,017,294RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596973052GWAS1092571_Hbipolar disorder, schizophrenia, major depressive disorder QTL GWAS1092571 (human)0.000004bipolar disorder, schizophrenia, major depressive disorder97601729376017294Human
597219523GWAS1315597_Hbipolar disorder, schizophrenia, major depressive disorder QTL GWAS1315597 (human)0.000004bipolar disorder, schizophrenia, major depressive disorder97601729376017294Human
406912558GWAS561534_Hunipolar depression, bipolar disorder, schizophrenia QTL GWAS561534 (human)0.000004unipolar depression, bipolar disorder, schizophrenia97601729376017294Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1315597_H GCST012297 Schizophrenia, bipolar disorder or major depressive disorder 11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls A 0.6882 0.000004 5.398 rs1890558 0.0627 PMID:34099189
None Available GCST012300 Schizophrenia, bipolar disorder or major depressive disorder 11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls A NR 0.000004 5.398 rs1890558 0.0627 PMID:34099189
Database
Acc Id
Source(s)
GWAS Catalog GCST012297 GWAS Catalog
  GCST012300 GWAS Catalog

Note Type Note Reference