GWAS558070_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS558070_H (breast carcinoma QTL GWAS558070 (human)) Homo sapiens

Symbol: GWAS558070_H
Name: breast carcinoma QTL GWAS558070 (human)
RGD ID: 406909094
Trait: breast carcinoma
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382143,733,825 - 43,733,826RGD_MAPPER_PIPELINEGRCh38
GRCh372145,153,706 - 45,153,707RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
30302202PDXKpyridoxal kinase214371912943762299Human
155754575LOC127894872H3K4me1 hESC enhancer GRCh37_chr21:45152891-45153850214373301043733969Human

Position Markers

Peak: (rs142471995)
Human AssemblyChrPosition (strand)Source
GRCh382143,733,825 - 43,733,826RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406909094GWAS558070_Hbreast carcinoma QTL GWAS558070 (human)0.000002breast carcinoma214373382543733826Human
2303081MAMTS49_HMammary tumor susceptibility QTL 49 (human)1.72Mammary tumor susceptibility211795044843950448Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS558070_H GCST004988 Breast cancer 76,192 European ancestry cases, 63,082 European ancestry controls T 0.0096 0.000002 5.699 rs142471995 0.2003 breast carcinoma (EFO:0000305)
 PMID:29059683
Database Acc Id Source(s)
GWAS Catalog GCST004988 GWAS Catalog

RGD Curation Notes
Note Type Note Reference