GWAS556919_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS556919_H (psoriasis QTL GWAS556919 (human)) Homo sapiens

Symbol: GWAS556919_H
Name: psoriasis QTL GWAS556919 (human)
RGD ID: 406907943
Trait: psoriasis
LOD Score: Not Available
P Value: 7.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38124,193,430 - 24,193,431RGD_MAPPER_PIPELINEGRCh38
GRCh37124,519,920 - 24,519,921RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
psoriasis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs4649203)
Human AssemblyChrPosition (strand)Source
GRCh38124,193,430 - 24,193,431RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406907943GWAS556919_Hpsoriasis QTL GWAS556919 (human)7e-08psoriasis12419343024193431Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS556919_H GCST000833 Psoriasis 2,178 European ancestry cases, 5,175 European ancestry controls A 0.73 7E-8 7.155 rs4649203 1.13 psoriasis (EFO:0000676)
 PMID:20953190
Database Acc Id Source(s)
GWAS Catalog GCST000833 GWAS Catalog

RGD Curation Notes
Note Type Note Reference