GWAS548171_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS548171_H (matrix metalloproteinase 7 measurement QTL GWAS548171 (human)) Homo sapiens

Symbol: GWAS548171_H
Name: matrix metalloproteinase 7 measurement QTL GWAS548171 (human)
RGD ID: 406899195
Trait: matrix metalloproteinase 7 measurement
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3811102,526,274 - 102,526,275RGD_MAPPER_PIPELINEGRCh38
GRCh3711102,397,005 - 102,397,006RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS548171_HHumanmatrix metalloproteinase 7 measurement  IAGPrs56857975405850206 GWAS_CATALOGPMID:35264221
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736005MMP7matrix metallopeptidase 711102520508102530747Human

Position Markers

Peak: (rs56857975)
Human AssemblyChrPosition (strand)Source
GRCh3811102,526,274 - 102,526,275RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406899195GWAS548171_Hmatrix metalloproteinase 7 measurement QTL GWAS548171 (human)0.000007matrix metalloproteinase 7 measurement11102526274102526275Human
1559115SCL20_HSerum cholesterol level QTL 20 (human)3.220.001213Lipid levelLDL cholesterol11100442501126442501Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS548171_H GCST90085758 MMP 7 plasma levels 400 French ancestry individuals C NR 0.000007 5.155 rs56857975 0.207 matrix metalloproteinase 7 measurement (EFO:0010591)
 PMID:35264221
Database Acc Id Source(s)
GWAS Catalog GCST90085758 GWAS Catalog

RGD Curation Notes
Note Type Note Reference