GWAS540719_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS540719_H (beta-1,4-galactosyltransferase 1 measurement QTL GWAS540719 (human)) Homo sapiens

Symbol: GWAS540719_H
Name: beta-1,4-galactosyltransferase 1 measurement QTL GWAS540719 (human)
RGD ID: 406891743
Trait: beta-1,4-galactosyltransferase 1 measurement
LOD Score: Not Available
P Value: 8.0E-29
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38933,113,324 - 33,113,325RGD_MAPPER_PIPELINEGRCh38
GRCh37933,113,322 - 33,113,323RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS540719_HHumanbeta-1,4-galactosyltransferase 1 measurement  IAGPrs7019909405850206 GWAS_CATALOGPMID:29875488
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1349315B4GALT1beta-1,4-galactosyltransferase 193310407733185089Human

Position Markers

Peak: (rs7019909)
Human AssemblyChrPosition (strand)Source
GRCh38933,113,324 - 33,113,325RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407018837GWAS667813_Hbody height QTL GWAS667813 (human)1e-11body height (VT:0001253)body height (CMO:0000106)93311332433113325Human
406955499GWAS604475_Hbeta-1,4-galactosyltransferase 1 measurement QTL GWAS604475 (human)2e-80beta-1,4-galactosyltransferase 1 measurement93311332433113325Human
407274010GWAS922986_Hbody height QTL GWAS922986 (human)2e-69body height (VT:0001253)body height (CMO:0000106)93311332433113325Human
407324410GWAS973386_Hbody height QTL GWAS973386 (human)6e-10body height (VT:0001253)body height (CMO:0000106)93311332433113325Human
406891743GWAS540719_Hbeta-1,4-galactosyltransferase 1 measurement QTL GWAS540719 (human)8e-29beta-1,4-galactosyltransferase 1 measurement93311332433113325Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS540719_H GCST90240400 Beta-1,4-galactosyltransferase 1 levels (B4GALT1.13381.49.3) 3,301 European ancestry individuals T 0.103 8E-29 28.097 rs7019909 0.45 beta-1,4-galactosyltransferase 1 measurement (EFO:0801409)
 PMID:29875488
GWAS604475_H GCST90246639 Beta-1,4-galactosyltransferase 1 levels 10,708 European ancestry individuals T 0.1 2E-80 79.699 rs7019909 0.413 beta-1,4-galactosyltransferase 1 measurement (EFO:0801409)
 PMID:34648354
GWAS667813_H GCST90245845 Height 472,730 East Asian ancestry individuals T 0.4444 1E-11 11 rs7019909 0.0165 body height (EFO:0004339)
 PMID:36224396
GWAS922986_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals T 0.1322 2E-69 68.699 rs7019909 0.017 body height (EFO:0004339)
 PMID:36224396
GWAS973386_H GCST90018959 Height 360,388 European ancestry individuals, 165,056 East Asian ancestry individuals T NR 6E-10 9.222 rs7019909 0.0101 body height (EFO:0004339)
 PMID:34594039
Database Acc Id Source(s)
GWAS Catalog GCST90240400 GWAS Catalog

RGD Curation Notes
Note Type Note Reference