D15Rat137 Marker Search Result - Rat Genome Database

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Marker: D15Rat137

Symbol: D15Rat137
Previously known as: oxsts9643; R0325-A09; 
RGD ID: 43036
Expected Size: 153 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81514,775,892 - 14,776,045 (+)Marker Load Pipeline
mRatBN7.21512,345,430 - 12,345,585 (+)MAPPERmRatBN7.2
Rnor_6.01515,330,772 - 15,330,924NCBIRnor6.0
Rnor_5.01519,333,571 - 19,333,723UniSTSRnor5.0
RGSC_v3.41513,915,113 - 13,915,266RGDRGSC3.4
RGSC_v3.41513,915,114 - 13,915,266UniSTSRGSC3.4
RGSC_v3.11513,915,113 - 13,915,266RGD
Celera1512,344,951 - 12,345,103UniSTS
SHRSP x BN Map159.5698UniSTS
SHRSP x BN Map159.5698RGD
Cytogenetic Map15p16UniSTS
Is Marker For: Genes:   Cadps  




#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer TGGGGGTTGACATTTTGTCT
Reverse Primer CATGGCACATGTGTCTGTGA
 
Template 
CTCTGATCTAGAGGATCCCCACTGGGCAGGCAGCCTCTTAACTTTGAAGCCTGCCGGTGGGCAT
GGCTCAGGACACTGTGGAGGGATTGCTTTGGTAAAACAGGCCTCTTGAGACTGTAGCAGTCACT
CAGGCTGTGTAACAAGAGCTCACAGACATCCATCCCCTCACAGTTCTGGGTGCTAAACACCCAA
GATCGGGGTAGCATAGACAGGCTCTGTGCTGGGGCTCTGTTTGGTTTACAGATAAGCCTTCCTG
CTGCATTTGTGAGACAGACTGCCTCTGGGGTCTCTTGGGAAGGCATTGTGGCTCCCTCACGGCT
GCCTCATCTTGGATTTTGTGAGGTTTGGCATGGAACCTAGGATTTCAGTGCATTCTAGGGAGGG
TACAGGGAAAATATAAATAGGCCTCTCCAAACATTAAGATGAGGGACGTTCTATAGAGCCTACA
TTATATGTTGGGGGTTGACATTTTGTCTAACCTATAGCTTTTTATCTTGAAAACTCAAATACAC
AGTGTTGGGAAAGTATGTTCTCTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGAATGTTCACAGACACATGTGCCATGCTGTGCCATATGTATGGCACAGTGCACATGCGAGGTC
GGGGACTTCGGTGTCGCCCTGCCTTCCCCTGGTTTGAGTTGGGTCCTTGCGTTCATGCGTGTCT
CCCGCCGGCCCGAGAGANGCGCAGGGTCAGCGGTTGCCCGCAGGAAAACTGTTGAGGGGTCGAA
TGNAAC


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
708573Cadpscalcium dependent secretion activator151228980312742786Rat
GenBank Nucleotide CH474010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 16 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat

1 to 10 of 16 rows


Database
Acc Id
Source(s)
NCBI Gene 26989 UniSTS