D4Rat247 Marker Search Result - Rat Genome Database

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Marker: D4Rat247

Symbol: D4Rat247
Previously known as: oxsts10968; R0335-A01; 
RGD ID: 42684
Expected Size: 145 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr849,085,906 - 9,086,051 (+)Marker Load Pipeline
mRatBN7.248,352,097 - 8,352,242 (+)MAPPERmRatBN7.2
Rnor_6.044,780,787 - 4,780,931NCBIRnor6.0
Rnor_5.044,814,654 - 4,814,798UniSTSRnor5.0
RGSC_v3.443,657,695 - 3,657,840RGDRGSC3.4
RGSC_v3.443,657,696 - 3,657,840UniSTSRGSC3.4
RGSC_v3.143,657,607 - 3,658,187RGD
Celera41,948,467 - 1,948,611UniSTS
SHRSP x BN Map40.0RGD
SHRSP x BN Map40.0UniSTS
Is Marker For: Genes:   LOC681751  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CAACTGAGCAATCTCCCCAT
Reverse Primer CCTGGACAAGTATGGTCCCA
 
Template 
CCCTCTGTAGCAGGAGTATCATAGTAGAGAAGATGGAGGATAATTGACTTGGTAGGGAATATAA
TTTTATTGGCAGAAATCACCACCACCATCATCATGGCTGAAACATGAACATTCCTCACAGGGCC
ATTTTTTATCTGTTTATGTCACCTTCCCTAGTTTTCCTGATAAACATTCCTATGGTGCTCCTGC
CACTATTGTTATTCAGAGTTTGGAATGTGAGGGAGGGGCTGTCTGAGCAAGGGGGAAGGTCACA
CAAAGGTGCACAGGTGGGTACAGGGATTTGAACCCAGGAAGTGTAGGTTTGTGAGGTTAAACTT
ATATTTCTATGTTTGCATAGCAATAATTTTGCCCAACTGAGCAATCTCCCCATACTCTGTCTTT
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATATTCATGTG
GGGACACATATGTGTGTGTATTTATGTGTTTATGGGACCATACTTGTCCAGGTGCCCTTGGTTG
TTACCGACCTTACTTTTTGAGACAGGGCCGTCACTGAACCAGTTCGTCCATTTGTTAGACTGAC
TGGTGAGCAAGGGTACCGAGCTCGAATTCGTAATCATGGNCATAGCTGTTTCCTGTGTGAAATT
GTTATCCGCNCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAGCCGGGGTGCCT
AATGGTGAGCTACCACATAATTGCGTNGCCACTGCCGCTNTCCNTCGGNACTGTCGGCAGCGCA
NATGNTCGGCACGCGCGGGGAGAGCGTNGCGTNTGGCGCAGGTGTTNTCTTTCACANGGAG

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68402Dpp6dipeptidyl peptidase like 6483232209242694Rat

Nucleotide Sequences
GenBank Nucleotide CH474057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4128392287Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4132668025Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4132668025Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4128392287Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4132668025Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4128392287Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4842855130449094Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4133538816Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4131106810Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4132668025Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 681751 UniSTS