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Gene: Gcnt3 (glucosaminyl (N-acetyl) transferase 3, mucin type) Rattus norvegicus

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Symbol:

Gcnt3

Name:

glucosaminyl (N-acetyl) transferase 3, mucin type

RGD ID:

631333

Description:

Enables N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to act upstream of or within intestinal absorption; kidney morphogenesis; and tissue morphogenesis. Predicted to be located in Golgi membrane. Orthologous to human GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3; beta-1,6-N-acetylglucosaminyltransferase; beta-16-N-acetylglucosaminyltransferase; C2GnT-M; C2GnT-mucin type; dI/C2/C4GnT; dIGnT

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Gcnt3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gcnt3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gcnt3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gcnt3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gcnt3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gcnt3 (glucosaminyl (N-acetyl) transferase 3, mucin type)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-15	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-16	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-18	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gly-19	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gcnt3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	skp1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	XB990816 [provisional:gcnt3]	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	79,570,081 - 79,577,389 (-)	NCBI		GRCr8
mRatBN7.2	8	70,689,173 - 70,696,476 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	70,686,844 - 70,699,562 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	76,222,535 - 76,226,011 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	74,495,548 - 74,499,024 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	72,334,218 - 72,337,695 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	76,449,078 - 76,459,431 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	76,449,081 - 76,452,554 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	76,619,913 - 76,629,509 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	74,470,610 - 74,474,086 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	74,489,666 - 74,493,140 (-)	NCBI
Celera	8	71,034,465 - 71,037,941 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gcnt3	Rat	Bloom syndrome		ISO	GCNT3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Bloom syndrome	ClinVar	PMID:28492532
Gcnt3	Rat	colorectal cancer		ISO	GCNT3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Colorectal cancer	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gcnt3	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of GCNT3 mRNA]	CTD	PMID:31150632
Gcnt3	Rat	1-naphthyl isothiocyanate	decreases expression	EXP		6480464	1-Naphthylisothiocyanate results in decreased expression of GCNT3 mRNA	CTD	PMID:30723492
Gcnt3	Rat	17beta-estradiol	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Estradiol results in increased expression of GCNT3 mRNA	CTD	PMID:20106945 and PMID:31614463
Gcnt3	Rat	17beta-estradiol	multiple interactions	EXP		6480464	[bisphenol A co-treated with Estradiol] results in increased expression of GCNT3 mRNA	CTD	PMID:26496021
Gcnt3	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in increased expression of GCNT3 mRNA	CTD	PMID:20106945 more ...
Gcnt3	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of GCNT3 mRNA	CTD	PMID:30047161
Gcnt3	Rat	acetamide	affects expression	EXP		6480464	acetamide affects the expression of GCNT3 mRNA	CTD	PMID:31881176
Gcnt3	Rat	acrylamide	increases expression	EXP		6480464	Acrylamide results in increased expression of GCNT3 mRNA	CTD	PMID:28959563
Gcnt3	Rat	adefovir pivoxil	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	adefovir dipivoxil results in increased expression of GCNT3 mRNA	CTD	PMID:25596134
Gcnt3	Rat	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of GCNT3 mRNA	CTD	PMID:23630614 more ...
Gcnt3	Rat	aflatoxin B1	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Aflatoxin B1 results in increased expression of GCNT3 mRNA	CTD	PMID:27153756
Gcnt3	Rat	amitrole	increases expression	EXP		6480464	Amitrole results in increased expression of GCNT3 mRNA	CTD	PMID:30047161
Gcnt3	Rat	ammonium chloride	affects expression	EXP		6480464	Ammonium Chloride affects the expression of GCNT3 mRNA	CTD	PMID:16483693
Gcnt3	Rat	antimony(0)	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Antimony results in increased expression of GCNT3 mRNA	CTD	PMID:17547211
Gcnt3	Rat	arsenous acid	multiple interactions	ISO	Gcnt3 (Mus musculus)	6480464	Metformin inhibits the reaction [Arsenic Trioxide results in increased expression of GCNT3 mRNA]	CTD	PMID:29095437
Gcnt3	Rat	arsenous acid	increases expression	ISO	Gcnt3 (Mus musculus)	6480464	Arsenic Trioxide results in increased expression of GCNT3 mRNA	CTD	PMID:29095437
Gcnt3	Rat	arsenous acid	decreases expression	ISO	GCNT3 (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of GCNT3 mRNA	CTD	PMID:21461292
Gcnt3	Rat	arsenous acid	decreases response to substance	ISO	GCNT3 (Homo sapiens)	6480464	GCNT3 protein results in decreased susceptibility to Arsenic Trioxide	CTD	PMID:20707922
Gcnt3	Rat	azathioprine	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Azathioprine results in increased expression of GCNT3 mRNA	CTD	PMID:22623647 and PMID:26198647
Gcnt3	Rat	Azoxymethane	multiple interactions	ISO	Gcnt3 (Mus musculus)	6480464	[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in increased expression of GCNT3 mRNA	CTD	PMID:29950665
Gcnt3	Rat	benzo[a]pyrene	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of GCNT3 mRNA	CTD	PMID:19737606 more ...
Gcnt3	Rat	benzo[a]pyrene	decreases methylation	ISO	Gcnt3 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased methylation of GCNT3 promoter	CTD	PMID:27901495
Gcnt3	Rat	benzo[a]pyrene	decreases methylation	ISO	GCNT3 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of GCNT3 3' UTR	CTD	PMID:27901495
Gcnt3	Rat	benzo[a]pyrene	affects methylation	ISO	GCNT3 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of GCNT3 5' UTR	CTD	PMID:27901495
Gcnt3	Rat	beta-naphthoflavone	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	beta-Naphthoflavone results in increased expression of GCNT3 mRNA	CTD	PMID:19737606
Gcnt3	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with Estradiol] results in increased expression of GCNT3 mRNA	CTD	PMID:26496021
Gcnt3	Rat	bisphenol A	increases expression	ISO	Gcnt3 (Mus musculus)	6480464	bisphenol A results in increased expression of GCNT3 mRNA	CTD	PMID:32156529
Gcnt3	Rat	bisphenol A	affects expression	ISO	GCNT3 (Homo sapiens)	6480464	bisphenol A affects the expression of GCNT3 mRNA	CTD	PMID:30903817
Gcnt3	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of GCNT3 mRNA	CTD	PMID:25181051
Gcnt3	Rat	cadmium dichloride	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of GCNT3 mRNA	CTD	PMID:25596134 and PMID:38568856
Gcnt3	Rat	calcitriol	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Calcitriol results in increased expression of GCNT3 mRNA	CTD	PMID:16002434
Gcnt3	Rat	carnosic acid	decreases expression	ISO	Gcnt3 (Mus musculus)	6480464	salvin results in decreased expression of GCNT3 protein	CTD	PMID:35926579
Gcnt3	Rat	CGP 52608	multiple interactions	ISO	GCNT3 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to GCNT3 gene]	CTD	PMID:28238834
Gcnt3	Rat	chloroacetaldehyde	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	chloroacetaldehyde results in increased expression of GCNT3 mRNA	CTD	PMID:25596134
Gcnt3	Rat	chromium(6+)	affects expression	ISO	Gcnt3 (Mus musculus)	6480464	chromium hexavalent ion affects the expression of GCNT3 mRNA	CTD	PMID:28472532
Gcnt3	Rat	cidofovir anhydrous	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Cidofovir results in increased expression of GCNT3 mRNA	CTD	PMID:25596134
Gcnt3	Rat	cisplatin	multiple interactions	ISO	GCNT3 (Homo sapiens)	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of GCNT3 mRNA	CTD	PMID:27392435
Gcnt3	Rat	cisplatin	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Cisplatin results in increased expression of GCNT3 mRNA	CTD	PMID:27392435
Gcnt3	Rat	cobalt atom	increases expression	ISO	Gcnt3 (Mus musculus)	6480464	Cobalt results in increased expression of GCNT3 mRNA	CTD	PMID:34468815
Gcnt3	Rat	copper atom	multiple interactions	ISO	GCNT3 (Homo sapiens)	6480464	[NSC 689534 binds to Copper] which results in increased expression of GCNT3 mRNA	CTD	PMID:20971185
Gcnt3	Rat	copper(0)	multiple interactions	ISO	GCNT3 (Homo sapiens)	6480464	[NSC 689534 binds to Copper] which results in increased expression of GCNT3 mRNA	CTD	PMID:20971185
Gcnt3	Rat	copper(II) sulfate	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of GCNT3 mRNA	CTD	PMID:19549813
Gcnt3	Rat	cyclosporin A	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Cyclosporine results in increased expression of GCNT3 mRNA	CTD	PMID:20106945 more ...
Gcnt3	Rat	cylindrospermopsin	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	cylindrospermopsin results in increased expression of GCNT3 mRNA	CTD	PMID:24921660
Gcnt3	Rat	DDE	decreases expression	ISO	GCNT3 (Homo sapiens)	6480464	Dichlorodiphenyl Dichloroethylene results in decreased expression of GCNT3 mRNA	CTD	PMID:38568856
Gcnt3	Rat	dextran sulfate	multiple interactions	ISO	Gcnt3 (Mus musculus)	6480464	[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in increased expression of GCNT3 mRNA	CTD	PMID:29950665
Gcnt3	Rat	diarsenic trioxide	increases expression	ISO	Gcnt3 (Mus musculus)	6480464	Arsenic Trioxide results in increased expression of GCNT3 mRNA	CTD	PMID:29095437
Gcnt3	Rat	diarsenic trioxide	multiple interactions	ISO	Gcnt3 (Mus musculus)	6480464	Metformin inhibits the reaction [Arsenic Trioxide results in increased expression of GCNT3 mRNA]	CTD	PMID:29095437
Gcnt3	Rat	diarsenic trioxide	decreases response to substance	ISO	GCNT3 (Homo sapiens)	6480464	GCNT3 protein results in decreased susceptibility to Arsenic Trioxide	CTD	PMID:20707922
Gcnt3	Rat	diarsenic trioxide	decreases expression	ISO	GCNT3 (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of GCNT3 mRNA	CTD	PMID:21461292
Gcnt3	Rat	diazinon	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Diazinon results in increased expression of GCNT3 mRNA	CTD	PMID:26198647
Gcnt3	Rat	diethyl malate	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	diethyl malate results in increased expression of GCNT3 mRNA	CTD	PMID:38498338
Gcnt3	Rat	diethyl maleate	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	diethyl maleate results in increased expression of GCNT3 mRNA	CTD	PMID:33545341
Gcnt3	Rat	diethylstilbestrol	decreases expression	EXP		6480464	Diethylstilbestrol results in decreased expression of GCNT3 mRNA	CTD	PMID:21658437
Gcnt3	Rat	diethylstilbestrol	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Diethylstilbestrol results in increased expression of GCNT3 mRNA	CTD	PMID:26198647
Gcnt3	Rat	dioxygen	decreases expression	ISO	GCNT3 (Homo sapiens)	6480464	Oxygen deficiency results in decreased expression of GCNT3 mRNA	CTD	PMID:25596134
Gcnt3	Rat	dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Antimony Potassium Tartrate results in increased expression of GCNT3 mRNA	CTD	PMID:17547211
Gcnt3	Rat	disodium selenite	decreases expression	ISO	GCNT3 (Homo sapiens)	6480464	Sodium Selenite results in decreased expression of GCNT3 mRNA	CTD	PMID:18175754
Gcnt3	Rat	Ethyl acrylate	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	ethyl acrylate results in increased expression of GCNT3 mRNA	CTD	PMID:26198647
Gcnt3	Rat	fenofibrate	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Fenofibrate results in increased expression of GCNT3 mRNA	CTD	PMID:25596134
Gcnt3	Rat	fonofos	increases methylation	ISO	GCNT3 (Homo sapiens)	6480464	Fonofos results in increased methylation of GCNT3 promoter	CTD	PMID:22847954
Gcnt3	Rat	furan	increases expression	EXP		6480464	furan results in increased expression of GCNT3 mRNA	CTD	PMID:26194646 and PMID:27387713
Gcnt3	Rat	genistein	decreases expression	ISO	Gcnt3 (Mus musculus)	6480464	Genistein results in decreased expression of GCNT3 mRNA	CTD	PMID:22553218
Gcnt3	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of GCNT3 mRNA	CTD	PMID:22061828
Gcnt3	Rat	hydrogen peroxide	affects expression	ISO	GCNT3 (Homo sapiens)	6480464	Hydrogen Peroxide affects the expression of GCNT3 mRNA	CTD	PMID:20044591 and PMID:23410634
Gcnt3	Rat	ibuprofen	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Ibuprofen results in increased expression of GCNT3 mRNA	CTD	PMID:25596134
Gcnt3	Rat	indole-3-methanol	affects expression	EXP		6480464	indole-3-carbinol affects the expression of GCNT3 mRNA	CTD	PMID:21396975
Gcnt3	Rat	isotretinoin	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Isotretinoin results in increased expression of GCNT3 mRNA	CTD	PMID:18769122
Gcnt3	Rat	lead diacetate	increases expression	ISO	Gcnt3 (Mus musculus)	6480464	lead acetate results in increased expression of GCNT3 mRNA	CTD	PMID:21829687
Gcnt3	Rat	leflunomide	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	leflunomide results in increased expression of GCNT3 mRNA	CTD	PMID:28988120
Gcnt3	Rat	lipopolysaccharide	multiple interactions	ISO	GCNT3 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of GCNT3 mRNA	CTD	PMID:35811015
Gcnt3	Rat	menadione	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Vitamin K 3 results in increased expression of GCNT3 mRNA	CTD	PMID:23410634
Gcnt3	Rat	metformin	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Metformin results in increased expression of GCNT3 mRNA	CTD	PMID:25596134
Gcnt3	Rat	metformin	multiple interactions	ISO	Gcnt3 (Mus musculus)	6480464	Metformin inhibits the reaction [Arsenic Trioxide results in increased expression of GCNT3 mRNA]	CTD	PMID:29095437
Gcnt3	Rat	metformin	increases expression	EXP		6480464	Metformin results in increased expression of GCNT3 mRNA	CTD	PMID:25596134
Gcnt3	Rat	methimazole	increases expression	EXP		6480464	Methimazole results in increased expression of GCNT3 mRNA	CTD	PMID:30047161
Gcnt3	Rat	N-nitrosodimethylamine	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Dimethylnitrosamine results in increased expression of GCNT3 mRNA	CTD	PMID:17547211
Gcnt3	Rat	N-nitrosodimethylamine	decreases expression	ISO	GCNT3 (Homo sapiens)	6480464	Dimethylnitrosamine results in decreased expression of GCNT3 mRNA	CTD	PMID:26198647
Gcnt3	Rat	N-Nitrosopyrrolidine	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	N-Nitrosopyrrolidine results in increased expression of GCNT3 mRNA	CTD	PMID:32234424
Gcnt3	Rat	nickel dichloride	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	nickel chloride results in increased expression of GCNT3 mRNA	CTD	PMID:17547211
Gcnt3	Rat	O-methyleugenol	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	methyleugenol results in increased expression of GCNT3 mRNA	CTD	PMID:32234424
Gcnt3	Rat	ochratoxin A	decreases expression	ISO	GCNT3 (Homo sapiens)	6480464	ochratoxin A results in decreased expression of GCNT3 mRNA	CTD	PMID:30559759
Gcnt3	Rat	ozone	increases expression	ISO	Gcnt3 (Mus musculus)	6480464	Ozone results in increased expression of GCNT3 mRNA	CTD	PMID:31626304 and PMID:33026818
Gcnt3	Rat	para-Cresidine	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	cresidine results in increased expression of GCNT3 mRNA	CTD	PMID:26198647
Gcnt3	Rat	paracetamol	decreases expression	ISO	GCNT3 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of GCNT3 mRNA	CTD	PMID:21420995 and PMID:29067470
Gcnt3	Rat	paracetamol	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Acetaminophen results in increased expression of GCNT3 mRNA	CTD	PMID:22230336
Gcnt3	Rat	parathion	increases methylation	ISO	GCNT3 (Homo sapiens)	6480464	Parathion results in increased methylation of GCNT3 promoter	CTD	PMID:22847954
Gcnt3	Rat	phorbol 13-acetate 12-myristate	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Tetradecanoylphorbol Acetate results in increased expression of GCNT3 mRNA	CTD	PMID:26198647
Gcnt3	Rat	pirinixic acid	multiple interactions	ISO	GCNT3 (Homo sapiens)	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in decreased expression of GCNT3 mRNA	CTD	PMID:19710929
Gcnt3	Rat	potassium bromate	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	potassium bromate results in increased expression of GCNT3 mRNA	CTD	PMID:30559759
Gcnt3	Rat	quercetin	affects expression	ISO	GCNT3 (Homo sapiens)	6480464	Quercetin affects the expression of GCNT3 mRNA	CTD	PMID:21632981
Gcnt3	Rat	reserpine	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Reserpine results in increased expression of GCNT3 mRNA	CTD	PMID:26198647
Gcnt3	Rat	resveratrol	multiple interactions	ISO	GCNT3 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of GCNT3 mRNA	CTD	PMID:23557933
Gcnt3	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	GCNT3 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of GCNT3 mRNA	CTD	PMID:35811015
Gcnt3	Rat	silicon dioxide	decreases expression	ISO	GCNT3 (Homo sapiens)	6480464	Silicon Dioxide results in decreased expression of GCNT3 mRNA	CTD	PMID:25351596
Gcnt3	Rat	silver atom	increases expression	ISO	Gcnt3 (Mus musculus)	6480464	Silver results in increased expression of GCNT3 mRNA	CTD	PMID:27131904
Gcnt3	Rat	silver(0)	increases expression	ISO	Gcnt3 (Mus musculus)	6480464	Silver results in increased expression of GCNT3 mRNA	CTD	PMID:27131904
Gcnt3	Rat	sodium arsenite	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	sodium arsenite results in increased expression of GCNT3 mRNA	CTD	PMID:38568856
Gcnt3	Rat	sodium arsenite	decreases expression	ISO	Gcnt3 (Mus musculus)	6480464	sodium arsenite results in decreased expression of GCNT3 mRNA	CTD	PMID:36209798
Gcnt3	Rat	sotorasib	multiple interactions	ISO	GCNT3 (Homo sapiens)	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of GCNT3 mRNA	CTD	PMID:36139627
Gcnt3	Rat	sulfadimethoxine	increases expression	EXP		6480464	Sulfadimethoxine results in increased expression of GCNT3 mRNA	CTD	PMID:30047161
Gcnt3	Rat	sulforaphane	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	sulforaphane results in increased expression of GCNT3 mRNA	CTD	PMID:31838189
Gcnt3	Rat	temozolomide	decreases expression	ISO	GCNT3 (Homo sapiens)	6480464	Temozolomide results in decreased expression of GCNT3 mRNA	CTD	PMID:31758290
Gcnt3	Rat	terbufos	increases methylation	ISO	GCNT3 (Homo sapiens)	6480464	terbufos results in increased methylation of GCNT3 promoter	CTD	PMID:22847954
Gcnt3	Rat	tert-butyl hydroperoxide	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	tert-Butylhydroperoxide results in increased expression of GCNT3 mRNA	CTD	PMID:23410634
Gcnt3	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of GCNT3 mRNA]	CTD	PMID:31150632
Gcnt3	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of GCNT3 mRNA	CTD	PMID:31150632
Gcnt3	Rat	titanium dioxide	multiple interactions	ISO	Gcnt3 (Mus musculus)	6480464	[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in increased expression of GCNT3 mRNA	CTD	PMID:29950665
Gcnt3	Rat	trametinib	multiple interactions	ISO	GCNT3 (Homo sapiens)	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of GCNT3 mRNA	CTD	PMID:36139627
Gcnt3	Rat	Tributyltin oxide	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	bis(tri-n-butyltin)oxide results in increased expression of GCNT3 mRNA	CTD	PMID:26198647
Gcnt3	Rat	trichloroethene	increases methylation	EXP		6480464	Trichloroethylene results in increased methylation of GCNT3 gene	CTD	PMID:27618143
Gcnt3	Rat	triptonide	decreases expression	ISO	Gcnt3 (Mus musculus)	6480464	triptonide results in decreased expression of GCNT3 mRNA	CTD	PMID:33045310
Gcnt3	Rat	tris(2-butoxyethyl) phosphate	affects expression	ISO	GCNT3 (Homo sapiens)	6480464	tris(2-butoxyethyl) phosphate affects the expression of GCNT3 mRNA	CTD	PMID:29024780
Gcnt3	Rat	valproic acid	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	Valproic Acid results in increased expression of GCNT3 mRNA	CTD	PMID:29154799
Gcnt3	Rat	zoledronic acid	increases expression	ISO	GCNT3 (Homo sapiens)	6480464	zoledronic acid results in increased expression of GCNT3 mRNA	CTD	PMID:24714768 and PMID:25596134

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gcnt3	Rat	intestinal absorption	acts_upstream_of_or_within	ISO	Gcnt3 (Mus musculus)	1624291	MGI:3849681 PMID:19349303	RGD	PMID:19349303
Gcnt3	Rat	kidney morphogenesis	acts_upstream_of_or_within	ISO	Gcnt3 (Mus musculus)	1624291	MGI:2684919 more ...	RGD	PMID:19349303
Gcnt3	Rat	protein glycosylation	involved_in	IEA	UniPathway:UPA00378	1600115	GO_REF:0000041	UniProt	GO_REF:0000041
Gcnt3	Rat	tissue morphogenesis	acts_upstream_of_or_within	ISO	Gcnt3 (Mus musculus)	1624291	MGI:2684919 more ...	RGD	PMID:19349303

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gcnt3	Rat	Golgi membrane	located_in	IEA	UniProtKB-SubCell:SL-0134	1600115	GO_REF:0000044	UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gcnt3	Rat	acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity	enables	ISO	Gcnt3 (Mus musculus)	1624291	MGI:3849681 PMID:19349303	RGD	PMID:19349303
Gcnt3	Rat	acetylglucosaminyltransferase activity	enables	IBA	MGI:1100870 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Gcnt3	Rat	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity	enables	IEA	EC:2.4.1.102	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Gcnt3	Rat	N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity		IDA		632635		RGD

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gcnt3	Rat	O-linked glycan biosynthetic pathway		IEA		6907045		KEGG	rno:00512

BioCyc Pathways

mucin core 1 and core 2 O-glycosylation

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Purification and cDNA cloning of UDP-GlcNAc:GlcNAcbeta1-3Galbeta1-4Glc(NAc)-R beta1,6N-acetylglucosaminyltransferase from rat small intestine: a major carrier of dIGnT activity in rat small intestine.	Korekane H, etal., Glycobiology 2003 May;13(5):387-400.
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.	Zhang T, etal., Genome Res 2004 Jan;14(1):79-89. Epub 2003 Dec 12.

PMID:19199708	PMID:19349303

Gcnt3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	79,570,081 - 79,577,389 (-)	NCBI		GRCr8
mRatBN7.2	8	70,689,173 - 70,696,476 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	70,686,844 - 70,699,562 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	76,222,535 - 76,226,011 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	74,495,548 - 74,499,024 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	72,334,218 - 72,337,695 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	76,449,078 - 76,459,431 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	76,449,081 - 76,452,554 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	76,619,913 - 76,629,509 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	74,470,610 - 74,474,086 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	74,489,666 - 74,493,140 (-)	NCBI
Celera	8	71,034,465 - 71,037,941 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

GCNT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	59,611,783 - 59,622,723 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	59,594,875 - 59,640,239 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	59,903,982 - 59,914,922 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	57,696,080 - 57,699,494 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	57,696,079 - 57,699,494	NCBI
Celera	15	36,791,942 - 36,800,170 (+)	NCBI		Celera
Cytogenetic Map	15	q22.2	NCBI
HuRef	15	36,725,984 - 36,734,208 (+)	NCBI		HuRef
CHM1_1	15	60,021,940 - 60,030,164 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	57,413,480 - 57,424,422 (+)	NCBI		T2T-CHM13v2.0

Gcnt3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	69,938,777 - 69,947,172 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	69,938,778 - 69,945,370 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	70,031,495 - 70,039,890 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	70,031,496 - 70,038,088 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	69,879,303 - 69,885,895 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	69,832,709 - 69,835,863 (-)	NCBI		MGSCv36	mm8
Celera	9	67,248,020 - 67,254,609 (-)	NCBI		Celera
Cytogenetic Map	9	D	NCBI
cM Map	9	39.2	NCBI

Gcnt3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	15,204,915 - 15,206,234 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	15,204,502 - 15,211,747 (-)	NCBI	ChiLan1.0	ChiLan1.0

GCNT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	48,789,988 - 48,884,418 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	52,972,590 - 53,067,057 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	38,580,509 - 38,589,223 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	56,886,258 - 56,894,488 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	56,892,716 - 56,894,032 (+)	Ensembl	panpan1.1		panPan2

GCNT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	24,481,698 - 24,487,855 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	24,484,791 - 24,486,110 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	24,453,399 - 24,461,927 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	24,648,016 - 24,656,544 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	24,653,477 - 24,654,796 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	24,573,714 - 24,582,220 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	24,656,320 - 24,664,852 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	24,843,650 - 24,852,207 (+)	NCBI		UU_Cfam_GSD_1.0

Gcnt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	102,777,693 - 102,783,736 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	20,628,716 - 20,630,014 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	20,627,441 - 20,631,661 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GCNT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	112,422,879 - 112,540,983 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	112,424,212 - 112,540,984 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	124,392,737 - 124,539,095 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GCNT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	23,886,782 - 23,893,201 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	23,887,297 - 23,888,613 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	117,437,575 - 117,441,427 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gcnt3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624781	12,520,100 - 12,525,831 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624781	12,522,330 - 12,541,178 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Gcnt3
20 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	51
Count of miRNA genes:	44
Interacting mature miRNAs:	49
Transcripts:	ENSRNOT00000014727
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	50095249	82460899	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	54237644	85365202	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	50095249	82460899	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	54237644	85365202	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	54259986	100382532	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	50095249	82460899	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	54043744	98968765	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
2303570	Gluco48	Glucose level QTL 48	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	49805831	94805831	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	54237644	99103503	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	3	19	39	84	84	57	25	57	6	157	60	24	29	52	27


RefSeq Transcripts	NM_001433050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_173312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB098520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000079815 ⟹ ENSRNOP00000071784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	70,689,177 - 70,696,461 (-)	Ensembl
Rnor_6.0 Ensembl	8	76,449,081 - 76,452,554 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104989 ⟹ ENSRNOP00000094498

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	70,686,848 - 70,692,858 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106219 ⟹ ENSRNOP00000093903

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	70,689,177 - 70,695,710 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109431 ⟹ ENSRNOP00000096892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	70,686,844 - 70,692,975 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112837 ⟹ ENSRNOP00000081773

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	70,686,844 - 70,699,562 (-)	Ensembl

RefSeq Acc Id:

NM_173312 ⟹ NP_775434

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	79,570,081 - 79,573,557 (-)	NCBI
mRatBN7.2	8	70,689,173 - 70,692,649 (-)	NCBI
Rnor_6.0	8	76,449,078 - 76,452,554 (-)	NCBI
Rnor_5.0	8	76,619,913 - 76,629,509 (+)	NCBI
RGSC_v3.4	8	74,470,610 - 74,474,086 (-)	RGD
Celera	8	71,034,465 - 71,037,941 (+)	RGD

Sequence:

show sequence

GCTCTCTCCTTTGCATAGGTCTAACAGGAGCGTTGAGCTCCTTGGAGTCTGGGAGGTAAGAAGGCAAAGTGTTAATTTGTACCTCGTAGAACCAAACTAACCTTCACTCCACAGACTCACAACGTTGG
AGAGAACTCCCCTAAGCAGCCAAGAAGGTATCAAAGAGAGCCCACCCACTCCTCTGCTGGGCGAGGCTTGATGGTTCCCACCTGTGAAGATGGTTTCATGGAGGAGGTTCTGTTGGCACTATCATGGG
TGGACCCTGGGCTGCTACATGCTGCTGGCTATCATTGCCCTGAAACTGTCCCTCAGATTGAAGTGTGATTTCGATGTCATGGATCTGGACTCAAAGGAATTTCAAAGCCAGTACTGCAGGGACCTCCT
GTACAAGACCCTGGAGCTGCCAGCAAAGAGTTCCATCAACTGTTCAGGGGTCATCCGAGGGGAACAGAAAGCGGTGACCCAGGCTCTGCTGAATAACCTGGAACTTAAGAGGAAGCGGCAGTCCTTCA
CAGAGGCTGACTACCTTAGCATGACGGCAGACTGTGAGCACTTCAAGACCCAGAGGAAGTTTATACAGGTCCCACTGAGCAAAGAAGAGGCCAACTTCCCCATTGCGTACTCCATGGTGATTCATGAG
AAGATTGAGAACTTTGAAAGGCTGCTGCGAGCTGTGTACACCCCTCAGAACATATACTGTGTCCATGTGGACCAGAAGTCTTCAGAAACTTTTCAGCAGGCAGTCAGGGCCATTGTGTCATGCTTCCC
CAATGTCTTCATAGCTAATAAGCTGGTGTCAGTGGTCTATGCCTCCTGGTCCAGAGTGCAGGCTGATCTGAACTGCATGGAAGACTTGCTCCAGAGCCCCGTGCCGTGGGAGTACCTCCTGAACACCT
GTGGGACAGACTTCCCCATCAAAACCAATGCCGAGATGGTCAAGGCCCTCAAGCTACTGAATGGGCAGAACAGCATGGAGTCAGAGGTACCACCTCCACATAAAACGTTCCGTTGGAAATACCACTAT
GAGGTGGCCGACACACTATACAGAACCAGCAAGGAGAAGACCCCGCCCCCTAACAACATAACCATGTTCACTGGCAATGCCTACATGGTGGCTTCTCGAGACTTCATTGAACATGTATTAAGTAACTC
AAAAGCCCGGCAACTGATCGAATGGGTAAAAGACACTTACAGTCCTGATGAGCACCTTTGGGCCACCCTCCAGCGTGCCTCATGGATGCCTGGATCAGATCCCTTGCACCCCAAATTTGACCTATCAG
ACATGAGATCCATTGCAAGACTAACCAAGTGGCAGGACCATGAGGGAGACATTGAGAATGGGGCGCCTTATACGTCTTGCTCAGGAATCCACCAGCGGGCTATCTGTGTTTACGGGTCAGGGGACCTG
CACTGGATACTTCAGAACCATCACCTCTTGGCCAACAAGTTTGATCCAAAGGTGGATGACAATGTTCTTCAGTGTCTAGAAGAATATTTACGTCACAAAGCCATCTATGGGACCGAGTTATGAGACTC
ACTGCAAGATGATTGTTACCTGTGTGGCAGGAAAATGCCAGGACCTACTGGGGCAATGTGGGGTAGGCAGCTGGGGCTCAAGACTCCATGTGTCCCTCAGGATGAGGGGCTGCAATTGGACAGTGGGT
AAGTAGACCTCTGCCCCTTGTGAGCTGTTGCTGGTGAATGTGGCCGTTCTCCAGTTCTTTCCCCAACAGGCTTTCTTTAGCTTCCTCACAGAGCTAGAAAAAGAAATACTGTTACTTGGGAAAGTGAC
GGAGGGGACATGTGGCCAGGGACTCTGGATTCTGGCTGAAGGCTTCCTGTCAGGTTCTCTACAGAGACTTTGTTTCAAATTCCCCTGGCTTAGTCTTGGGAGGGGAACTTTAGTGCAAAGAACCCTCC
TCTTTTGTATTGTTAATTTAAAATAAATAGCTTCTAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006243366 ⟹ XP_006243428

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	79,570,081 - 79,577,389 (-)	NCBI
mRatBN7.2	8	70,689,173 - 70,696,476 (-)	NCBI
Rnor_6.0	8	76,449,078 - 76,459,431 (-)	NCBI
Rnor_5.0	8	76,619,913 - 76,629,509 (+)	NCBI

Sequence:

show sequence

TTGAGATACTGCCTCTTTGAGTCACAGCCTCCTCTGTAAAGAAAACTGGGACTGCCCTTGCTACCCACAACTCTTGACACCCATGACCCACTCTGCAAACAACCCCTTTGTTTTGGAAAGCCTCTGAA
TTCTACTGCCTATGACTAAGCTCTGAGAGGAAGCAGAAGCAAAAATTATGACCCTGAAGCTCACATCTGGCCCAAGCAAATCCTGCCGCAGCAAATTAAATGACCTTGGAAGACCACCTTCAGGCTCA
TTCAGTTCCATCTTCGGTCCTCAGAGGGGCGAAGGACCCCAGTGACGGACCTCATCCTTAAGACATCTTTATAAGCCAACAATGAAAAGTCACGAGGATAAACCCCGGAAGCTAGCAGAAGACAAAAC
CCATGAAGCTGGGCCAATGACAGAATGGGTGCTGAGAAATCTACACATCTCCAATTGCTTTGGGTGGGTTTCCATCTCTGATCAGAAAGTGCTGGGAAGACAAGAAAAAAATCAGTTCCTGCACTGAG
CATAGCAGAAATGATACATTTACAGTCTCCAGACCAGACGGCCTCCCCAGTCTGTGACACTGGCAACAGGACTGAAAACCAGTCTGGCTTGCCAGACGTATCCTTGCTAAGCTCTACCAGTAGAGGAC
GCTAGTATGAGATAGCTAGGCTGAAGGCGAGACTTCCGGTTCTTTTTCTACTTCCGGCTTGAGCATCACCTTGTCAACGCCTGCTGACCTCTCGAAAGACGTTCATTTTATTTTTGTACCTGAACTAG
GACCAGTTTACAGGAATGACCCCTGCCACCTCTAAGAGACTCACAACGTTGGAGAGAACTCCCCTAAGCAGCCAAGAAGGTATCAAAGAGAGCCCACCCACTCCTCTGCTGGGCGAGGCTTGATGGTT
CCCACCTGTGAAGATGGTTTCATGGAGGAGGTTCTGTTGGCACTATCATGGGTGGACCCTGGGCTGCTACATGCTGCTGGCTATCATTGCCCTGAAACTGTCCCTCAGATTGAAGTGTGATTTCGATG
TCATGGATCTGGACTCAAAGGAATTTCAAAGCCAGTACTGCAGGGACCTCCTGTACAAGACCCTGGAGCTGCCAGCAAAGAGTTCCATCAACTGTTCAGGGGTCATCCGAGGGGAACAGAAAGCGGTG
ACCCAGGCTCTGCTGAATAACCTGGAACTTAAGAGGAAGCGGCAGTCCTTCACAGAGGCTGACTACCTTAGCATGACGGCAGACTGTGAGCACTTCAAGACCCAGAGGAAGTTTATACAGGTCCCACT
GAGCAAAGAAGAGGCCAACTTCCCCATTGCGTACTCCATGGTGATTCATGAGAAGATTGAGAACTTTGAAAGGCTGCTGCGAGCTGTGTACACCCCTCAGAACATATACTGTGTCCATGTGGACCAGA
AGTCTTCAGAAACTTTTCAGCAGGCAGTCAGGGCCATTGTGTCATGCTTCCCCAATGTCTTCATAGCTAATAAGCTGGTGTCAGTGGTCTATGCCTCCTGGTCCAGAGTGCAGGCTGATCTGAACTGC
ATGGAAGACTTGCTCCAGAGCCCCGTGCCGTGGGAGTACCTCCTGAACACCTGTGGGACAGACTTCCCCATCAAAACCAATGCCGAGATGGTCAAGGCCCTCAAGCTACTGAATGGGCAGAACAGCAT
GGAGTCAGAGGTACCACCTCCACATAAAACGTTCCGTTGGAAATACCACTATGAGGTGGCCGACACACTATACAGAACCAGCAAGGAGAAGACCCCGCCCCCTAACAACATAACCATGTTCACTGGCA
ATGCCTACATGGTGGCTTCTCGAGACTTCATTGAACATGTATTAAGTAACTCAAAAGCCCGGCAACTGATCGAATGGGTAAAAGACACTTACAGTCCTGATGAGCACCTTTGGGCCACCCTCCAGCGT
GCCTCATGGATGCCTGGATCAGATCCCTTGCACCCCAAATTTGACCTATCAGACATGAGATCCATTGCAAGACTAACCAAGTGGCAGGACCATGAGGGAGACATTGAGAATGGGGCGCCTTATACGTC
TTGCTCAGGAATCCACCAGCGGGCTATCTGTGTTTACGGGTCAGGGGACCTGCACTGGATACTTCAGAACCATCACCTCTTGGCCAACAAGTTTGATCCAAAGGTGGATGACAATGTTCTTCAGTGTC
TAGAAGAATATTTACGTCACAAAGCCATCTATGGGACCGAGTTATGAGACTCACTGCAAGATGATTGTTACCTGTGTGGCAGGAAAATGCCAGGACCTACTGGGGCAATGTGGGGTAGGCAGCTGGGG
CTCAAGACTCCATGTGTCCCTCAGGATGAGGGGCTGCAATTGGACAGTGGGTAAGTAGACCTCTGCCCCTTGTGAGCTGTTGCTGGTGAATGTGGCCGTTCTCCAGTTCTTTCCCCAACAGGCTTTCT
TTAGCTTCCTCACAGAGCTAGAAAAAGAAATACTGTTACTTGGGAAAGTGACGGAGGGGACATGTGGCCAGGGACTCTGGATTCTGGCTGAAGGCTTCCTGTCAGGTTCTCTACAGAGACTTTGTTTC
AAATTCCCCTGGCTTAGTCTTGGGAGGGGAACTTTAGTGCAAAGAACCCTCCTCTTTTGTATTGTTAATTTAAAATAAATAGCTTCTAAACCAAA

hide sequence


Protein RefSeqs	NP_001419979	(Get FASTA)	NCBI Sequence Viewer
	NP_775434	(Get FASTA)	NCBI Sequence Viewer
	XP_006243428	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAC53607	(Get FASTA)	NCBI Sequence Viewer
	EDL84193	(Get FASTA)	NCBI Sequence Viewer
	EDL84194	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071784.1
	ENSRNOP00000081773.1
	ENSRNOP00000093903.1
	ENSRNOP00000094498.1
	ENSRNOP00000096892.1
GenBank Protein	Q8CH87	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_775434 ⟸ NM_173312

- UniProtKB:

Q8CH87 (UniProtKB/Swiss-Prot), A6KEU3 (UniProtKB/TrEMBL), A6KEU2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVSWRRFCWHYHGWTLGCYMLLAIIALKLSLRLKCDFDVMDLDSKEFQSQYCRDLLYKTLELPAKSSINCSGVIRGEQKAVTQALLNNLELKRKRQSFTEADYLSMTADCEHFKTQRKFIQVPLSKEE
ANFPIAYSMVIHEKIENFERLLRAVYTPQNIYCVHVDQKSSETFQQAVRAIVSCFPNVFIANKLVSVVYASWSRVQADLNCMEDLLQSPVPWEYLLNTCGTDFPIKTNAEMVKALKLLNGQNSMESEV
PPPHKTFRWKYHYEVADTLYRTSKEKTPPPNNITMFTGNAYMVASRDFIEHVLSNSKARQLIEWVKDTYSPDEHLWATLQRASWMPGSDPLHPKFDLSDMRSIARLTKWQDHEGDIENGAPYTSCSGI
HQRAICVYGSGDLHWILQNHHLLANKFDPKVDDNVLQCLEEYLRHKAIYGTEL

hide sequence

RefSeq Acc Id:

XP_006243428 ⟸ XM_006243366

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVSWRRFCWHYHGWTLGCYMLLAIIALKLSLRLKCDFDVMDLDSKEFQSQYCRDLLYKTLELPA
KSSINCSGVIRGEQKAVTQALLNNLELKRKRQSFTEADYLSMTADCEHFKTQRKFIQVPLSKEEANFPIAYSMVIHEKIENFERLLRAVYTPQNIYCVHVDQKSSETFQQAVRAIVSCFPNVFIANKL
VSVVYASWSRVQADLNCMEDLLQSPVPWEYLLNTCGTDFPIKTNAEMVKALKLLNGQNSMESEVPPPHKTFRWKYHYEVADTLYRTSKEKTPPPNNITMFTGNAYMVASRDFIEHVLSNSKARQLIEW
VKDTYSPDEHLWATLQRASWMPGSDPLHPKFDLSDMRSIARLTKWQDHEGDIENGAPYTSCSGIHQRAICVYGSGDLHWILQNHHLLANKFDPKVDDNVLQCLEEYLRHKAIYGTEL

hide sequence

Ensembl Acc Id:

ENSRNOP00000071784 ⟸ ENSRNOT00000079815

Ensembl Acc Id:

ENSRNOP00000096892 ⟸ ENSRNOT00000109431

Ensembl Acc Id:

ENSRNOP00000081773 ⟸ ENSRNOT00000112837

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8CH87-F1-model_v2	AlphaFold	Q8CH87	1-437	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13696104

Promoter ID:

EPDNEW_R6628

Type:

multiple initiation site

Name:

Gcnt3_1

Description:

glucosaminyl (N-acetyl) transferase 3, mucin type

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	76,452,554 - 76,452,614	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-29945	BioCyc
BioCyc Pathway	PWY-7433 [mucin core 1 and core 2 O-glycosylation]	BioCyc
BioCyc Pathway Image	PWY-7433	BioCyc
Ensembl Genes	ENSRNOG00000059540	Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000079815.2	UniProtKB/Swiss-Prot
	ENSRNOT00000104989.1	UniProtKB/Swiss-Prot
	ENSRNOT00000106219.1	UniProtKB/Swiss-Prot
	ENSRNOT00000109431.1	UniProtKB/Swiss-Prot
	ENSRNOT00000112837.1	UniProtKB/Swiss-Prot
InterPro	Glyco_trans_14	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:286976	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	286976	ENTREZGENE
PANTHER	BETA-1,3-GALACTOSYL-O-GLYCOSYL-GLYCOPROTEIN BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GLYCOSYLTRANSFERASE 14 FAMILY MEMBER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Branch	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Gcnt3	PhenoGen
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000059540	RatGTEx
UniProt	A6KEU2	ENTREZGENE, UniProtKB/TrEMBL
	A6KEU3	ENTREZGENE, UniProtKB/TrEMBL
	GCNT3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Gcnt3	glucosaminyl (N-acetyl) transferase 3, mucin type	dI/C2/C4GnT	beta-1,6-N-acetylglucosaminyltransferase	Symbol and Name updated	1299863	APPROVED

Note Type	Note	Reference
gene_function	catalyzes the conversion of the polylactosamine GlcNAcbeta1-3'LacNAc into GlcNAcbeta1-3'(GlcNAcbeta1-6') LacNAc (dIGnT activity); also converts mucin core 1 and core 3 analogs, Galbeta1-3GalNAcalpha1-O-paranitrophenyl (pNP) and GlcNAcbeta1-3GalNAcalpha1-O-pNP, into Galbeta1-3(GlcNAcbeta1-6) GalNAcalpha1-O-pNP (C2GnT activity) and GlcNAcbeta1-3(GlcNAcbeta1-6)GalNAcalpha1-O-pNP (C4GnT activity), respectively	632635
gene_transcript	each variable exon is preceded by a promoter regions which may be responsible for tissue specific gene expression	1302827

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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