Gcnt3 (glucosaminyl (N-acetyl) transferase 3, mucin type) - Rat Genome Database

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Gene: Gcnt3 (glucosaminyl (N-acetyl) transferase 3, mucin type) Mus musculus
Analyze
Symbol: Gcnt3
Name: glucosaminyl (N-acetyl) transferase 3, mucin type
RGD ID: 1553706
MGI Page MGI
Description: Enables acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity. Acts upstream of or within intestinal absorption; kidney morphogenesis; and tissue morphogenesis. Predicted to be located in Golgi apparatus and membrane. Orthologous to human GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 2010013H22Rik; 2210021I22Rik; 2210401J11Rik; beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3; C2GnT-M; C2GnT-mucin type; core 2 beta-1,6-N-acetylglucosaminyltransferase II; mucus-type core 2 beta-1,6-N-acetylglucosaminyltransferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39969,938,777 - 69,947,172 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl969,938,778 - 69,945,370 (-)EnsemblGRCm39 Ensembl
GRCm38970,031,495 - 70,039,890 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,031,496 - 70,038,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv37969,879,303 - 69,885,895 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36969,832,709 - 69,835,863 (-)NCBIMGSCv36mm8
Celera967,248,020 - 67,254,609 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antimony(0)  (ISO)
arsenous acid  (EXP,ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carnosic acid  (EXP)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chromium(6+)  (EXP)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
cobalt atom  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (EXP,ISO)
diazinon  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
disodium selenite  (ISO)
Ethyl acrylate  (ISO)
fenofibrate  (ISO)
fonofos  (ISO)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
indole-3-methanol  (ISO)
isotretinoin  (ISO)
lead diacetate  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
metformin  (EXP,ISO)
methimazole  (ISO)
N-nitrosodimethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel dichloride  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
ozone  (EXP)
para-Cresidine  (ISO)
paracetamol  (ISO)
parathion  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
potassium bromate  (ISO)
quercetin  (ISO)
reserpine  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP)
sotorasib  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (EXP)
trametinib  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (ISO)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14681479   PMID:16141072   PMID:16141073   PMID:17591617   PMID:19349303   PMID:20855471  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:23408841   PMID:23555902   PMID:26880801   PMID:30642949  


Genomics

Comparative Map Data
Gcnt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39969,938,777 - 69,947,172 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl969,938,778 - 69,945,370 (-)EnsemblGRCm39 Ensembl
GRCm38970,031,495 - 70,039,890 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,031,496 - 70,038,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv37969,879,303 - 69,885,895 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36969,832,709 - 69,835,863 (-)NCBIMGSCv36mm8
Celera967,248,020 - 67,254,609 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.2NCBI
GCNT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381559,549,039 - 59,622,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1559,594,875 - 59,640,239 (+)EnsemblGRCh38hg38GRCh38
GRCh371559,903,982 - 59,914,922 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361557,696,080 - 57,699,494 (+)NCBINCBI36Build 36hg18NCBI36
Build 341557,696,079 - 57,699,494NCBI
Celera1536,791,942 - 36,800,170 (+)NCBICelera
Cytogenetic Map15q22.2NCBI
HuRef1536,725,984 - 36,734,208 (+)NCBIHuRef
CHM1_11560,021,940 - 60,030,164 (+)NCBICHM1_1
T2T-CHM13v2.01557,413,480 - 57,424,422 (+)NCBIT2T-CHM13v2.0
Gcnt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8879,570,081 - 79,577,389 (-)NCBIGRCr8
mRatBN7.2870,689,173 - 70,696,476 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl870,686,844 - 70,699,562 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx876,222,535 - 76,226,011 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0874,495,548 - 74,499,024 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0872,334,218 - 72,337,695 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0876,449,078 - 76,459,431 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl876,449,081 - 76,452,554 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0876,619,913 - 76,629,509 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4874,470,610 - 74,474,086 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1874,489,666 - 74,493,140 (-)NCBI
Celera871,034,465 - 71,037,941 (+)NCBICelera
Cytogenetic Map8q24NCBI
Gcnt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545015,204,915 - 15,206,234 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545015,204,502 - 15,211,747 (-)NCBIChiLan1.0ChiLan1.0
GCNT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21648,789,988 - 48,884,418 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11552,972,590 - 53,067,057 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01538,580,509 - 38,589,223 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11556,886,258 - 56,894,488 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1556,892,716 - 56,894,032 (+)Ensemblpanpan1.1panPan2
GCNT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13024,481,698 - 24,487,855 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3024,484,791 - 24,486,110 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3024,453,399 - 24,461,927 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03024,648,016 - 24,656,544 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3024,653,477 - 24,654,796 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13024,573,714 - 24,582,220 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03024,656,320 - 24,664,852 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03024,843,650 - 24,852,207 (+)NCBIUU_Cfam_GSD_1.0
Gcnt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640102,777,693 - 102,783,736 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647120,628,716 - 20,630,014 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647120,627,441 - 20,631,661 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCNT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,422,879 - 112,540,983 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,424,212 - 112,540,984 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,392,737 - 124,539,095 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GCNT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12623,886,782 - 23,893,201 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2623,887,297 - 23,888,613 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048117,437,575 - 117,441,427 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gcnt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478112,520,100 - 12,525,831 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478112,522,330 - 12,541,178 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gcnt3
305 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:876
Count of miRNA genes:506
Interacting mature miRNAs:620
Transcripts:ENSMUST00000034751
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95780504771481754Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96583105686577967Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
14700779Syncq8_msynovial calcification QTL 8 (mouse)96951428270692282Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000034751   ⟹   ENSMUSP00000034751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl969,938,778 - 69,945,370 (-)Ensembl
GRCm38.p6 Ensembl970,031,496 - 70,038,088 (-)Ensembl
RefSeq Acc Id: NM_028087   ⟹   NP_082363
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,938,778 - 69,945,370 (-)NCBI
GRCm38970,031,496 - 70,038,088 (-)NCBI
MGSCv37969,879,303 - 69,885,895 (-)RGD
Celera967,248,020 - 67,254,609 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511463   ⟹   XP_006511526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,938,777 - 69,945,356 (-)NCBI
GRCm38970,031,495 - 70,038,074 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242815   ⟹   XP_011241117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,938,777 - 69,946,945 (-)NCBI
GRCm38970,031,495 - 70,039,663 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242816   ⟹   XP_011241118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,938,777 - 69,947,172 (-)NCBI
GRCm38970,031,495 - 70,039,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244620   ⟹   XP_030100480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,938,777 - 69,947,163 (-)NCBI
GRCm38970,031,495 - 70,039,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244621   ⟹   XP_030100481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39969,938,777 - 69,944,882 (-)NCBI
GRCm38970,031,495 - 70,037,600 (-)NCBI
Sequence:
RefSeq Acc Id: NP_082363   ⟸   NM_028087
- UniProtKB: Q8VCX9 (UniProtKB/Swiss-Prot),   A2TIK7 (UniProtKB/Swiss-Prot),   Q9D8A3 (UniProtKB/Swiss-Prot),   Q5JCT0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511526   ⟸   XM_006511463
- Peptide Label: isoform X1
- UniProtKB: Q8VCX9 (UniProtKB/Swiss-Prot),   A2TIK7 (UniProtKB/Swiss-Prot),   Q9D8A3 (UniProtKB/Swiss-Prot),   Q5JCT0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011241117   ⟸   XM_011242815
- Peptide Label: isoform X1
- UniProtKB: Q8VCX9 (UniProtKB/Swiss-Prot),   A2TIK7 (UniProtKB/Swiss-Prot),   Q9D8A3 (UniProtKB/Swiss-Prot),   Q5JCT0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011241118   ⟸   XM_011242816
- Peptide Label: isoform X1
- UniProtKB: Q8VCX9 (UniProtKB/Swiss-Prot),   A2TIK7 (UniProtKB/Swiss-Prot),   Q9D8A3 (UniProtKB/Swiss-Prot),   Q5JCT0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030100480   ⟸   XM_030244620
- Peptide Label: isoform X1
- UniProtKB: Q8VCX9 (UniProtKB/Swiss-Prot),   Q5JCT0 (UniProtKB/Swiss-Prot),   A2TIK7 (UniProtKB/Swiss-Prot),   Q9D8A3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030100481   ⟸   XM_030244621
- Peptide Label: isoform X1
- UniProtKB: Q8VCX9 (UniProtKB/Swiss-Prot),   Q5JCT0 (UniProtKB/Swiss-Prot),   A2TIK7 (UniProtKB/Swiss-Prot),   Q9D8A3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000034751   ⟸   ENSMUST00000034751

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5JCT0-F1-model_v2 AlphaFold Q5JCT0 1-437 view protein structure

Promoters
RGD ID:8670082
Promoter ID:EPDNEW_M13072
Type:initiation region
Name:Gcnt3_1
Description:Mus musculus glucosaminyl (N-acetyl) transferase 3, mucin type, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13073  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38970,036,692 - 70,036,752EPDNEW
RGD ID:8670084
Promoter ID:EPDNEW_M13073
Type:multiple initiation site
Name:Gcnt3_2
Description:Mus musculus glucosaminyl (N-acetyl) transferase 3, mucin type, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13072  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38970,038,004 - 70,038,064EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919327 AgrOrtholog
Ensembl Genes ENSMUSG00000032226 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034751 ENTREZGENE
  ENSMUST00000034751.6 UniProtKB/Swiss-Prot
InterPro Glyco_trans_14 UniProtKB/Swiss-Prot
KEGG Report mmu:72077 UniProtKB/Swiss-Prot
MGD MGI:1919327 ENTREZGENE
NCBI Gene 72077 ENTREZGENE
PANTHER BETA-1,3-GALACTOSYL-O-GLYCOSYL-GLYCOPROTEIN BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE 3 UniProtKB/Swiss-Prot
  GLYCOSYLTRANSFERASE 14 FAMILY MEMBER UniProtKB/Swiss-Prot
Pfam Branch UniProtKB/Swiss-Prot
PhenoGen Gcnt3 PhenoGen
UniProt A2TIK7 ENTREZGENE
  GCNT3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8VCX9 ENTREZGENE
  Q9D8A3 ENTREZGENE
UniProt Secondary A2TIK7 UniProtKB/Swiss-Prot
  Q8VCX9 UniProtKB/Swiss-Prot
  Q9D8A3 UniProtKB/Swiss-Prot