Rpl26-ps3 (ribosomal protein L26, pseudogene 3) - Rat Genome Database

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Gene: Rpl26-ps3 (ribosomal protein L26, pseudogene 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl26-ps3
Name: ribosomal protein L26, pseudogene 3
RGD ID: 1563840
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation and ribosomal large subunit biogenesis. Predicted to be part of cytosolic large ribosomal subunit.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 60S ribosomal protein L26-like; ENSRNOG00000067640; LOC100910721; LOC307636; RGD1563840; ribosomal protein L26-like 1; Rpl26l1; similar to 60S ribosomal protein L26
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rpl26  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,031,418 - 9,031,912 (+)NCBIGRCr8
mRatBN7.2199,025,282 - 9,025,776 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,025,311 - 9,025,748 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl199,025,311 - 9,025,748 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx198,990,275 - 8,990,769 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,757,103 - 9,757,597 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,041,705 - 9,042,198 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0199,436,196 - 9,436,690 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,436,210 - 9,436,662 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0199,421,991 - 9,422,431 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4199,479,529 - 9,479,966 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera198,923,202 - 8,923,696 (+)NCBICelera
Cytogenetic Map19p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl26-ps3Ratcytoplasmic translation involved_inIBAPANTHER:PTN000124940 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rpl26-ps3Ratribosomal large subunit biogenesis involved_inIBAPANTHER:PTN000124940 and UniProtKB:P612541600115GO_REF:0000033GO_CentralGO_REF:0000033
Rpl26-ps3Rattranslation involved_inIEAInterPro:IPR005756 and InterPro:IPR0058251600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl26-ps3Ratcytosolic large ribosomal subunit part_ofIBAMGI:106022 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rpl26-ps3Ratlarge ribosomal subunit part_ofIEAInterPro:IPR0057561600115GO_REF:0000002InterProGO_REF:0000002
Rpl26-ps3Ratribonucleoprotein complex part_ofIEAUniProtKB-KW:KW-06871600115GO_REF:0000043UniProtGO_REF:0000043
Rpl26-ps3Ratribosome located_inIEAUniProtKB-KW:KW-06891600115GO_REF:0000043UniProtGO_REF:0000043
Rpl26-ps3Ratribosome located_inIEAInterPro:IPR0058251600115GO_REF:0000002InterProGO_REF:0000002

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl26-ps3RatRNA binding enablesIBAPANTHER:PTN000124940 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rpl26-ps3RatRNA binding enablesIEAInterPro:IPR0419881600115GO_REF:0000002InterProGO_REF:0000002
Rpl26-ps3Ratstructural constituent of ribosome enablesIBAFB:FBgn0036825 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rpl26-ps3Ratstructural constituent of ribosome enablesIEAInterPro:IPR005756 and InterPro:IPR0058251600115GO_REF:0000002InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Rpl26-ps3
3 total Variants

1 to 10 of 17 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat

1 to 10 of 17 rows






Ensembl Acc Id: ENSRNOT00000074845   ⟹   ENSRNOP00000065065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl199,025,311 - 9,025,748 (+)Ensembl
Rnor_6.0 Ensembl199,436,210 - 9,436,662 (+)Ensembl
RefSeq Acc Id: XR_597122
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0199,436,225 - 9,436,666 (+)NCBI
RefSeq Acc Id: XR_598416
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera198,923,231 - 8,923,672 (+)NCBI
Ensembl Protein ENSRNOP00000065065.3
Ensembl Acc Id: ENSRNOP00000065065   ⟸   ENSRNOT00000074845
KOW

Name Modeler Protein Id AA Range Protein Structure
AF-M0R6L3-F1-model_v2 AlphaFold M0R6L3 1-150 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700933
Promoter ID:EPDNEW_R11443
Type:single initiation site
Name:LOC100910721_1
Description:60S ribosomal protein L26-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0199,436,197 - 9,436,257EPDNEW


1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-6563 BioCyc
Ensembl Genes ENSRNOG00000061282 Ensembl
  ENSRNOG00000067640 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074845.3 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.30 UniProtKB/TrEMBL
InterPro KOW UniProtKB/TrEMBL
  KOW_RPL26/RPL24 UniProtKB/TrEMBL
  Rib_L2_dom2 UniProtKB/TrEMBL
  Ribosomal_L24/26_CS UniProtKB/TrEMBL
  Ribosomal_L26/L24P_euk/arc UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
NCBI Gene 307636 ENTREZGENE
PANTHER PTHR11143 UniProtKB/TrEMBL
Pfam KOW UniProtKB/TrEMBL
  Ribosomal_L26 UniProtKB/TrEMBL
PhenoGen Rpl26-ps3 PhenoGen
PROSITE RIBOSOMAL_L24 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000061282 RatGTEx
  ENSRNOG00000067640 RatGTEx
SMART KOW UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt M0R6L3_RAT UniProtKB/TrEMBL
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Rpl26-ps3  ribosomal protein L26, pseudogene 3  ENSRNOG00000067640    Data merged from RGD:150341450 737654 PROVISIONAL
2021-08-31 ENSRNOG00000067640        Symbol and Name status set to provisional 45752 PROVISIONAL
2021-03-09 Rpl26-ps3  ribosomal protein L26, pseudogene 3  LOC100910721  60S ribosomal protein L26-like  Data merged from RGD:6497033 737654 PROVISIONAL
2012-07-05 LOC100910721  60S ribosomal protein L26-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2011-01-14 Rpl26-ps3  ribosomal protein L26, pseudogene 3  Rpl26l1  ribosomal protein L26-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Rpl26l1  ribosomal protein L26-like 1  RGD1563840_predicted  similar to 60S ribosomal protein L26 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563840_predicted  similar to 60S ribosomal protein L26 (predicted)  LOC307636  similar to 60S ribosomal protein L26  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307636  similar to 60S ribosomal protein L26      Symbol and Name status set to provisional 70820 PROVISIONAL